Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LA20079_RS08155 | Genome accession | NZ_CP020620 |
| Coordinates | 1654316..1654834 (+) | Length | 172 a.a. |
| NCBI ID | WP_011254001.1 | Uniprot ID | - |
| Organism | Lactobacillus acidophilus strain DSM 20079 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1649316..1659834
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA20079_RS08140 (LA20079_08045) | gyrB | 1649324..1651288 (+) | 1965 | WP_021873993.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| LA20079_RS08145 (LA20079_08050) | gyrA | 1651299..1653773 (+) | 2475 | WP_003549372.1 | DNA gyrase subunit A | - |
| LA20079_RS08150 (LA20079_08055) | rpsF | 1653974..1654270 (+) | 297 | WP_003549370.1 | 30S ribosomal protein S6 | - |
| LA20079_RS08155 (LA20079_08060) | ssb | 1654316..1654834 (+) | 519 | WP_011254001.1 | single-stranded DNA-binding protein | Machinery gene |
| LA20079_RS08160 (LA20079_08065) | rpsR | 1654863..1655099 (+) | 237 | WP_003549366.1 | 30S ribosomal protein S18 | - |
| LA20079_RS08165 (LA20079_08070) | - | 1655277..1657298 (+) | 2022 | WP_003549345.1 | DHH family phosphoesterase | - |
| LA20079_RS08170 (LA20079_08075) | rplI | 1657311..1657766 (+) | 456 | WP_003549343.1 | 50S ribosomal protein L9 | - |
| LA20079_RS08175 (LA20079_08080) | dnaB | 1657792..1659186 (+) | 1395 | WP_003549341.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18829.48 Da Isoelectric Point: 4.7317
>NTDB_id=225103 LA20079_RS08155 WP_011254001.1 1654316..1654834(+) (ssb) [Lactobacillus acidophilus strain DSM 20079]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFSLLESRKDREARGQSGGYTPNNGNINNQPANNFQNNGGSQNNPQINNNQSSSQDPFAGSG
DTIDISDDDLPF
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFSLLESRKDREARGQSGGYTPNNGNINNQPANNFQNNGGSQNNPQINNNQSSSQDPFAGSG
DTIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=225103 LA20079_RS08155 WP_011254001.1 1654316..1654834(+) (ssb) [Lactobacillus acidophilus strain DSM 20079]
ATGATTAATAGAGTTGTACTTGTTGGCCGATTAACACGTGATCCTGAATTGCGTACTACTGGAAGTGGAATTTCGGTAGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGTCAGGGTGAGAGAGGCGCAGACTTTATCAGCTGTGTAATCT
GGAGAAAGGCTGCGGAAAACTTCTGTAACTTTACTTCAAAAGGTTCATTAGTTGGTATTGATGGCCGTATTCAAACCAGA
AGCTATGACAATAAAGATGGGCAACGAGTATATGTAACTGAAGTTGTTGTTGATAACTTCTCATTACTTGAATCACGTAA
GGATCGTGAAGCCCGCGGTCAAAGTGGTGGATATACACCAAATAATGGAAATATTAACAATCAACCTGCTAATAATTTCC
AAAATAATGGTGGATCACAAAATAATCCACAGATTAATAACAATCAAAGTTCTTCACAAGATCCATTTGCTGGATCAGGT
GATACTATTGATATTTCTGATGATGATCTTCCATTCTAA
ATGATTAATAGAGTTGTACTTGTTGGCCGATTAACACGTGATCCTGAATTGCGTACTACTGGAAGTGGAATTTCGGTAGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGTCAGGGTGAGAGAGGCGCAGACTTTATCAGCTGTGTAATCT
GGAGAAAGGCTGCGGAAAACTTCTGTAACTTTACTTCAAAAGGTTCATTAGTTGGTATTGATGGCCGTATTCAAACCAGA
AGCTATGACAATAAAGATGGGCAACGAGTATATGTAACTGAAGTTGTTGTTGATAACTTCTCATTACTTGAATCACGTAA
GGATCGTGAAGCCCGCGGTCAAAGTGGTGGATATACACCAAATAATGGAAATATTAACAATCAACCTGCTAATAATTTCC
AAAATAATGGTGGATCACAAAATAATCCACAGATTAATAACAATCAAAGTTCTTCACAAGATCCATTTGCTGGATCAGGT
GATACTATTGATATTTCTGATGATGATCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.857 |
100 |
0.64 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.056 |
100 |
0.57 |