Detailed information NTG0225044

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C2U48_RS20265
• Genome accession: NZ_CP026202
• Coordinates: 3791902..3792894 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ECONIH5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3786902..3797894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2U48_RS20235 (C2U48_20220)	ispD	3786963..3787673 (+)	711	WP_000246137.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C2U48_RS20240 (C2U48_20225)	ispF	3787673..3788152 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C2U48_RS20245 (C2U48_20230)	truD	3788149..3789198 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C2U48_RS20250 (C2U48_20235)	surE	3789179..3789940 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C2U48_RS20255 (C2U48_20240)	pcm	3789934..3790560 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C2U48_RS20260 (C2U48_20245)	nlpD	3790745..3791839 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C2U48_RS20265 (C2U48_20250)	rpoS	3791902..3792894 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C2U48_RS20270 (C2U48_20255)	ygbN	3792988..3794352 (-)	1365	WP_000104466.1	GntP family transporter	-
C2U48_RS20275 (C2U48_20260)	ygbM	3794441..3795217 (-)	777	WP_001136936.1	HPr family phosphocarrier protein	-
C2U48_RS20280 (C2U48_20265)	ygbL	3795222..3795860 (-)	639	WP_001278994.1	aldolase	-
C2U48_RS20285 (C2U48_20270)	otnK	3795857..3797119 (-)	1263	WP_000590398.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=225044 C2U48_RS20265 WP_000081550.1 3791902..3792894(+) (rpoS) [Escherichia coli strain ECONIH5]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=225044 C2U48_RS20265 WP_000081550.1 3791902..3792894(+) (rpoS) [Escherichia coli strain ECONIH5]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715