Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   B7P03_RS09035 Genome accession   NZ_CP020618
Coordinates   1811480..1812064 (-) Length   194 a.a.
NCBI ID   WP_087437032.1    Uniprot ID   -
Organism   Staphylococcus hominis subsp. hominis strain K1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1806480..1817064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7P03_RS09010 (B7P03_08950) - 1807990..1808760 (-) 771 WP_049334565.1 VOC family protein -
  B7P03_RS09015 (B7P03_08955) - 1808931..1809374 (+) 444 WP_087436884.1 MarR family winged helix-turn-helix transcriptional regulator -
  B7P03_RS09020 (B7P03_08960) - 1809361..1810565 (+) 1205 Protein_1768 MFS transporter -
  B7P03_RS09025 (B7P03_08965) - 1810640..1810990 (-) 351 WP_002448468.1 SarA family transcriptional regulator -
  B7P03_RS09035 (B7P03_08975) comK/comK1 1811480..1812064 (-) 585 WP_087437032.1 competence protein ComK Regulator
  B7P03_RS09040 (B7P03_08980) - 1812272..1812490 (+) 219 WP_002448162.1 IDEAL domain-containing protein -
  B7P03_RS11670 - 1812558..1812656 (-) 99 WP_017175792.1 SAR1012 family small protein -
  B7P03_RS09045 (B7P03_08985) - 1812746..1812958 (-) 213 WP_087437031.1 TM2 domain-containing protein -
  B7P03_RS09050 (B7P03_08990) - 1813102..1813653 (+) 552 WP_061544581.1 GNAT family N-acetyltransferase -
  B7P03_RS09055 (B7P03_08995) - 1813703..1814641 (-) 939 WP_071560565.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  B7P03_RS09060 (B7P03_09000) - 1814822..1816189 (+) 1368 WP_087437030.1 isochorismate synthase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22923.15 Da        Isoelectric Point: 9.5206

>NTDB_id=225044 B7P03_RS09035 WP_087437032.1 1811480..1812064(-) (comK/comK1) [Staphylococcus hominis subsp. hominis strain K1]
MTQFNKSPNTIYVIRKGDMVIRPTFDDHQQPNGSEILKFDTSREISSFKTQKIIERSCRFYGNNYLSKKAETQRIAGITS
KPPILLTPLFPTYFFPTHSDRLEENIWINMHYISDIKPLKNRKSKIVFANQESLTLNVSFHSLWHQYSNSIFYYYMIDKQ
ARMKSNNPDMPIDYEKTSLNIFEALSHYSLLEDK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=225044 B7P03_RS09035 WP_087437032.1 1811480..1812064(-) (comK/comK1) [Staphylococcus hominis subsp. hominis strain K1]
ATGACTCAGTTCAATAAATCTCCTAATACGATTTATGTCATACGTAAAGGTGATATGGTGATTAGACCTACCTTTGATGA
TCATCAACAACCGAACGGCTCAGAAATCCTCAAATTCGATACCTCACGAGAAATAAGCTCTTTTAAAACTCAAAAAATTA
TTGAACGATCTTGTAGATTTTATGGCAATAACTACTTAAGCAAGAAAGCTGAAACTCAACGCATTGCTGGAATAACTAGT
AAACCTCCCATCCTTCTCACACCATTGTTTCCAACTTACTTTTTCCCAACACATTCAGACCGTTTAGAAGAAAATATATG
GATTAATATGCATTATATTTCTGATATTAAGCCATTAAAAAACAGAAAGAGTAAAATTGTCTTTGCAAATCAAGAATCAC
TAACATTAAATGTATCTTTTCATAGTTTATGGCATCAATATTCTAATTCTATTTTCTATTACTATATGATTGATAAACAA
GCAAGAATGAAGTCTAATAATCCAGATATGCCAATCGATTATGAAAAAACATCTTTAAATATTTTTGAGGCCCTTTCACA
CTATTCTTTATTAGAAGATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

74.457

94.845

0.706
  comK/comK1 Staphylococcus aureus N315

74.457

94.845

0.706

Multiple sequence alignment