Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   B7L46_RS07210 Genome accession   NZ_CP020597
Coordinates   1296343..1297161 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain HWBA8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1291343..1302161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L46_RS07195 (B7L46_07200) pilE 1291560..1291985 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  B7L46_RS07200 (B7L46_07205) pilY2 1291982..1292464 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  B7L46_RS07205 (B7L46_07210) pilY1 1292477..1296331 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  B7L46_RS07210 (B7L46_07215) pilX 1296343..1297161 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  B7L46_RS07215 (B7L46_07220) pilW 1297158..1298159 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  B7L46_RS07220 (B7L46_07225) pilV 1298160..1298720 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  B7L46_RS07225 (B7L46_07230) fimU 1298714..1299187 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  B7L46_RS07230 (B7L46_07235) ispH 1299357..1300307 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  B7L46_RS07235 (B7L46_07240) gmk 1300430..1301059 (+) 630 WP_000015937.1 guanylate kinase -
  B7L46_RS07240 (B7L46_07245) rpoZ 1301132..1301410 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  B7L46_RS20665 - 1301449..1301579 (+) 131 Protein_1207 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=224781 B7L46_RS07210 WP_000149374.1 1296343..1297161(-) (pilX) [Acinetobacter baumannii strain HWBA8]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=224781 B7L46_RS07210 WP_000149374.1 1296343..1297161(-) (pilX) [Acinetobacter baumannii strain HWBA8]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment