Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   RS_RS03365 Genome accession   NC_003295
Coordinates   713495..713863 (+) Length   122 a.a.
NCBI ID   WP_003269243.1    Uniprot ID   Q8Y1M1
Organism   Ralstonia pseudosolanacearum GMI1000     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 708495..718863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS_RS03340 (RS01569) - 708983..709609 (-) 627 WP_016723449.1 LemA family protein -
  RS_RS03345 (RS01570) dapA 709993..710907 (+) 915 WP_011000622.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RS_RS03350 (RS01571) hemL 711010..712311 (-) 1302 WP_011000623.1 glutamate-1-semialdehyde 2,1-aminomutase -
  RS_RS03355 (RS01572) - 712523..712705 (+) 183 WP_003261842.1 rubredoxin -
  RS_RS03360 (RS01573) pilG 712996..713463 (+) 468 WP_016723446.1 response regulator Regulator
  RS_RS03365 (RS01574) pilH 713495..713863 (+) 369 WP_003269243.1 response regulator Machinery gene
  RS_RS03370 (RS01575) - 713922..714467 (+) 546 WP_011000625.1 chemotaxis protein CheW -
  RS_RS03375 (RS01576) - 714713..716944 (+) 2232 WP_011000626.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13482.73 Da        Isoelectric Point: 4.9328

>NTDB_id=22477 RS_RS03365 WP_003269243.1 713495..713863(+) (pilH) [Ralstonia pseudosolanacearum GMI1000]
MAIKKILVVDDSPTEALFLSEILSKNGFKVSVAADSDQAMAKLEGEPFDLVLMDVVMPGQNGYQATRAIKKDDRFKDIPV
IICTTKGLETDRVWGMRQGASDYIVKPVKAEELLEKIAKLPQ

Nucleotide


Download         Length: 369 bp        

>NTDB_id=22477 RS_RS03365 WP_003269243.1 713495..713863(+) (pilH) [Ralstonia pseudosolanacearum GMI1000]
ATGGCAATCAAAAAGATTCTGGTGGTTGATGACTCCCCCACCGAAGCACTGTTCCTGTCGGAAATCCTGAGCAAGAACGG
TTTCAAGGTGTCGGTCGCGGCCGACAGCGACCAGGCCATGGCCAAGCTGGAAGGCGAGCCTTTCGACCTGGTCCTGATGG
ACGTGGTGATGCCCGGCCAGAACGGCTACCAGGCCACCCGCGCGATCAAGAAGGACGATCGCTTCAAGGACATCCCGGTG
ATCATCTGCACCACCAAGGGCCTGGAGACCGACCGCGTGTGGGGCATGCGCCAGGGCGCGTCGGACTACATCGTCAAGCC
GGTCAAGGCAGAAGAGCTGCTCGAAAAGATCGCCAAGCTGCCGCAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y1M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

44.915

96.721

0.434

Multiple sequence alignment