Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RS_RS03360 Genome accession   NC_003295
Coordinates   712996..713463 (+) Length   155 a.a.
NCBI ID   WP_016723446.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum GMI1000     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 707996..718463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS_RS03335 (RS01568) - 708131..708970 (-) 840 WP_011000620.1 TPM domain-containing protein -
  RS_RS03340 (RS01569) - 708983..709609 (-) 627 WP_016723449.1 LemA family protein -
  RS_RS03345 (RS01570) dapA 709993..710907 (+) 915 WP_011000622.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RS_RS03350 (RS01571) hemL 711010..712311 (-) 1302 WP_011000623.1 glutamate-1-semialdehyde 2,1-aminomutase -
  RS_RS03355 (RS01572) - 712523..712705 (+) 183 WP_003261842.1 rubredoxin -
  RS_RS03360 (RS01573) pilG 712996..713463 (+) 468 WP_016723446.1 response regulator Regulator
  RS_RS03365 (RS01574) pilH 713495..713863 (+) 369 WP_003269243.1 response regulator Machinery gene
  RS_RS03370 (RS01575) - 713922..714467 (+) 546 WP_011000625.1 chemotaxis protein CheW -
  RS_RS03375 (RS01576) - 714713..716944 (+) 2232 WP_011000626.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16767.51 Da        Isoelectric Point: 8.2887

>NTDB_id=22476 RS_RS03360 WP_016723446.1 712996..713463(+) (pilG) [Ralstonia pseudosolanacearum GMI1000]
MVAQRENMMQSARVEQLTNSQPLASSLAGRKVLVIDDSSTIRRTAQIFLSKVDCQVVLAEDGFDALAKLGDFKPDIVFCD
ILMPKLDGYLTCSLIKKSPKFHATPVVMLSSRDGVFDRARGKLVGAVDHLAKPFSREALLEAVQAHLPAAAGAAQ

Nucleotide


Download         Length: 468 bp        

>NTDB_id=22476 RS_RS03360 WP_016723446.1 712996..713463(+) (pilG) [Ralstonia pseudosolanacearum GMI1000]
GTGGTCGCGCAACGCGAGAACATGATGCAATCCGCGCGGGTGGAACAACTGACCAATTCCCAACCGCTGGCGAGTTCGCT
TGCCGGCCGTAAAGTGCTGGTGATCGACGATTCCAGTACCATCCGCCGTACCGCGCAGATTTTCCTGTCCAAGGTCGATT
GCCAGGTCGTGCTGGCCGAAGACGGGTTCGATGCGCTGGCCAAGCTGGGTGACTTCAAGCCGGACATCGTCTTTTGCGAC
ATCCTGATGCCCAAGCTGGACGGTTACCTGACCTGCTCACTGATCAAGAAAAGCCCGAAGTTTCATGCCACGCCCGTGGT
CATGCTGTCGTCGCGCGACGGGGTGTTCGACCGCGCGCGCGGCAAGCTGGTCGGGGCGGTGGACCACCTTGCCAAGCCTT
TCTCGCGGGAAGCGCTGCTGGAGGCGGTCCAGGCGCATCTGCCGGCAGCCGCTGGCGCCGCGCAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(32-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

54.622

76.774

0.419

Multiple sequence alignment