Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C1703_RS07870 Genome accession   NZ_CP026121
Coordinates   1722933..1723574 (-) Length   213 a.a.
NCBI ID   WP_198678112.1    Uniprot ID   -
Organism   Streptomyces sp. Go-475     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1717933..1728574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1703_RS07835 (C1703_07735) - 1718237..1718743 (+) 507 WP_114251210.1 HNH endonuclease -
  C1703_RS07840 (C1703_07740) - 1718800..1719759 (-) 960 WP_114251211.1 SPFH domain-containing protein -
  C1703_RS07845 (C1703_07745) - 1719892..1720323 (-) 432 WP_114251212.1 NfeD family protein -
  C1703_RS07850 (C1703_07750) - 1720419..1721216 (-) 798 WP_114251213.1 ABC transporter ATP-binding protein -
  C1703_RS39590 (C1703_07755) - 1721378..1722166 (+) 789 WP_114251214.1 hypothetical protein -
  C1703_RS07865 (C1703_07760) - 1722534..1722776 (-) 243 WP_114251215.1 chaplin -
  C1703_RS07870 (C1703_07765) vraR 1722933..1723574 (-) 642 WP_198678112.1 response regulator transcription factor Regulator
  C1703_RS07875 (C1703_07770) - 1723567..1724712 (-) 1146 WP_114251216.1 GAF domain-containing sensor histidine kinase -
  C1703_RS07880 (C1703_07775) - 1724985..1725683 (+) 699 WP_114251217.1 SDR family oxidoreductase -
  C1703_RS07885 (C1703_07780) - 1725680..1726723 (+) 1044 WP_114251218.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  C1703_RS07890 (C1703_07785) - 1727071..1727799 (+) 729 WP_114251219.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22980.22 Da        Isoelectric Point: 4.9993

>NTDB_id=224752 C1703_RS07870 WP_198678112.1 1722933..1723574(-) (vraR) [Streptomyces sp. Go-475]
MADVIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVDRAEELRPDVILMDVKMPGMDGVDALRRLRELDNPAR
VLVVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEEANSGPGRGGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVTG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=224752 C1703_RS07870 WP_198678112.1 1722933..1723574(-) (vraR) [Streptomyces sp. Go-475]
GTGGCTGACGTGATCAAGGTACTGCTCGTCGACGACCACCAGGTCGTCCGCCGGGGCCTGCGCACGTTCCTCGAAGTGCA
GGACGACATCGAGGTCGTCGGCGAGGCGGCCGACGGCGCCGAGGGAGTCGACCGGGCCGAGGAACTGCGGCCCGACGTCA
TCCTCATGGACGTCAAGATGCCGGGCATGGACGGCGTCGACGCCCTGCGCAGACTCCGCGAACTCGACAACCCCGCGCGC
GTGCTGGTCGTCACCAGCTTCACCGAGCAGCGCACGGTGGTCCCGGCCCTGCGCGCGGGCGCCGCCGGCTACGTCTACAA
GGACGTCGACCCCGACGCCCTCGCCGGAGCCATCCGCTCCGTCCACGCCGGGCACATCCTCCTCCAGCCGGAGGTCGCCG
GCGCCCTGCTCTCCCAGGAGGAGGCCAACTCCGGCCCCGGCAGGGGAGGTTCACTGACCGAGCGGGAGCGCGAGGTGCTC
GGCCTGATAGCGGACGGCCGTTCCAACCGGGAGATCGCCCGCGCGCTCGTCCTCTCCGAGAAGACCGTCAAGACCCACGT
CTCGAACATCCTGATGAAACTCGACCTGGCCGACCGAACGCAGGCCGCCCTGTGGGCCGTTCGCCATGGCGTGACCGGCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.635

97.653

0.455
  degU Bacillus subtilis subsp. subtilis str. 168

37.557

100

0.39

Multiple sequence alignment