Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   B7L39_RS12400 Genome accession   NZ_CP020592
Coordinates   2606234..2606707 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain USA2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2601234..2611707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L39_RS12385 (B7L39_12385) pilX 2603863..2604681 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  B7L39_RS12390 (B7L39_12390) pilW 2604678..2605679 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  B7L39_RS12395 (B7L39_12395) pilV 2605680..2606240 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  B7L39_RS12400 (B7L39_12400) fimU 2606234..2606707 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  B7L39_RS12405 (B7L39_12405) ispH 2606877..2607827 (-) 951 WP_083028594.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  B7L39_RS12410 (B7L39_12410) gmk 2607950..2608579 (+) 630 WP_000015937.1 guanylate kinase -
  B7L39_RS12415 (B7L39_12415) rpoZ 2608652..2608930 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  B7L39_RS19285 - 2608969..2609098 (+) 130 Protein_2440 hypothetical protein -
  B7L39_RS12420 (B7L39_12420) - 2609138..2611243 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=224697 B7L39_RS12400 WP_001214061.1 2606234..2606707(-) (fimU) [Acinetobacter baumannii strain USA2]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=224697 B7L39_RS12400 WP_001214061.1 2606234..2606707(-) (fimU) [Acinetobacter baumannii strain USA2]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987

Multiple sequence alignment