Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   B7L39_RS12385 Genome accession   NZ_CP020592
Coordinates   2603863..2604681 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain USA2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2598863..2609681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L39_RS12370 (B7L39_12370) pilE 2599080..2599505 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  B7L39_RS12375 (B7L39_12375) pilY2 2599502..2599984 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  B7L39_RS12380 (B7L39_12380) pilY1 2599997..2603851 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  B7L39_RS12385 (B7L39_12385) pilX 2603863..2604681 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  B7L39_RS12390 (B7L39_12390) pilW 2604678..2605679 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  B7L39_RS12395 (B7L39_12395) pilV 2605680..2606240 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  B7L39_RS12400 (B7L39_12400) fimU 2606234..2606707 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  B7L39_RS12405 (B7L39_12405) ispH 2606877..2607827 (-) 951 WP_083028594.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  B7L39_RS12410 (B7L39_12410) gmk 2607950..2608579 (+) 630 WP_000015937.1 guanylate kinase -
  B7L39_RS12415 (B7L39_12415) rpoZ 2608652..2608930 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  B7L39_RS19285 - 2608969..2609098 (+) 130 Protein_2440 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=224694 B7L39_RS12385 WP_000149374.1 2603863..2604681(-) (pilX) [Acinetobacter baumannii strain USA2]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=224694 B7L39_RS12385 WP_000149374.1 2603863..2604681(-) (pilX) [Acinetobacter baumannii strain USA2]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment