Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   B7L40_RS03625 Genome accession   NZ_CP020591
Coordinates   777397..778215 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain SSA6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 772397..783215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L40_RS03610 (B7L40_03610) pilE 772614..773039 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  B7L40_RS03615 (B7L40_03615) pilY2 773036..773518 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  B7L40_RS03620 (B7L40_03620) pilY1 773531..777385 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  B7L40_RS03625 (B7L40_03625) pilX 777397..778215 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  B7L40_RS03630 (B7L40_03630) pilW 778212..779213 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  B7L40_RS03635 (B7L40_03635) pilV 779214..779774 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  B7L40_RS03640 (B7L40_03640) fimU 779768..780241 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  B7L40_RS03645 (B7L40_03645) ispH 780411..781361 (-) 951 WP_083028594.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  B7L40_RS03650 (B7L40_03650) gmk 781484..782113 (+) 630 WP_000015937.1 guanylate kinase -
  B7L40_RS03655 (B7L40_03655) rpoZ 782186..782464 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  B7L40_RS18560 - 782503..782632 (+) 130 Protein_704 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=224639 B7L40_RS03625 WP_000149374.1 777397..778215(-) (pilX) [Acinetobacter baumannii strain SSA6]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=224639 B7L40_RS03625 WP_000149374.1 777397..778215(-) (pilX) [Acinetobacter baumannii strain SSA6]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment