Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   B7L45_RS01890 Genome accession   NZ_CP020579
Coordinates   397419..397946 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain SAA14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 392419..402946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L45_RS01875 (B7L45_01875) pilM 394972..396030 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  B7L45_RS01880 (B7L45_01880) pilN 396030..396671 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  B7L45_RS01885 (B7L45_01885) pilO 396668..397408 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  B7L45_RS01890 (B7L45_01890) pilP 397419..397946 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  B7L45_RS01895 (B7L45_01895) pilQ 398014..400176 (+) 2163 WP_033503048.1 type IV pilus secretin PilQ family protein Machinery gene
  B7L45_RS01900 (B7L45_01900) aroK 400188..400757 (+) 570 WP_000643712.1 shikimate kinase AroK -
  B7L45_RS01905 (B7L45_01905) aroB 400786..401868 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  B7L45_RS01910 (B7L45_01910) - 401884..402759 (+) 876 WP_000218802.1 hypothetical protein -

Sequence


Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=224352 B7L45_RS01890 WP_000695065.1 397419..397946(+) (pilP) [Acinetobacter baumannii strain SAA14]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=224352 B7L45_RS01890 WP_000695065.1 397419..397946(+) (pilP) [Acinetobacter baumannii strain SAA14]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains


Predicted by InterproScan.

(27-170)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1

  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714


Multiple sequence alignment