Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   NMA_RS07255 Genome accession   NC_003116
Coordinates   1342990..1343667 (-) Length   225 a.a.
NCBI ID   WP_002222553.1    Uniprot ID   Q9JU84
Organism   Neisseria meningitidis Z2491     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1337990..1348667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA_RS07240 (NMA1445) hflX 1339576..1340754 (-) 1179 WP_002233922.1 GTPase HflX -
  NMA_RS07245 (NMA1446) - 1340759..1342039 (-) 1281 WP_002233923.1 CAP domain-containing protein -
  NMA_RS14830 - 1342041..1342169 (+) 129 WP_009347251.1 hypothetical protein -
  NMA_RS07250 (NMA1447) - 1342192..1342917 (-) 726 WP_002233924.1 epoxyqueuosine reductase QueH -
  NMA_RS07255 (NMA1448) ysxA/radC 1342990..1343667 (-) 678 WP_002222553.1 RadC family protein Machinery gene
  NMA_RS07260 (NMA1449) gshA 1343790..1345139 (-) 1350 WP_002246946.1 glutamate--cysteine ligase -
  NMA_RS07265 (NMA1450) leuC 1345395..1346804 (+) 1410 WP_002249844.1 3-isopropylmalate dehydratase large subunit -
  NMA_RS07270 (NMA1451) - 1346901..1347155 (+) 255 WP_002213442.1 hypothetical protein -
  NMA_RS07275 (NMA1452) leuD 1347217..1347858 (+) 642 WP_002241612.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24990.83 Da        Isoelectric Point: 5.7262

>NTDB_id=22434 NMA_RS07255 WP_002222553.1 1342990..1343667(-) (ysxA/radC) [Neisseria meningitidis Z2491]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=22434 NMA_RS07255 WP_002222553.1 1342990..1343667(-) (ysxA/radC) [Neisseria meningitidis Z2491]
ATGAGCATCAAGCAATGGCCGGAGGGGGAAAGGCCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTTGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTAGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACCGTTGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGTTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGTGAAATTGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JU84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378