Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   B6S64_RS10365 Genome accession   NZ_CP020574
Coordinates   2043735..2044061 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 15A5     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2038735..2049061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6S64_RS10345 (B6S64_10345) - 2038836..2039465 (-) 630 WP_000219967.1 FHA domain-containing protein -
  B6S64_RS10350 (B6S64_10350) gspD 2039506..2041782 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  B6S64_RS10355 (B6S64_10355) - 2041824..2042660 (-) 837 WP_000870033.1 type II secretion system protein N -
  B6S64_RS10360 (B6S64_10360) gspN 2042660..2043403 (-) 744 WP_000730343.1 type II secretion system protein N -
  B6S64_RS10365 (B6S64_10365) hns 2043735..2044061 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  B6S64_RS10370 (B6S64_10370) - 2044256..2044696 (-) 441 WP_000661570.1 acyl-CoA thioesterase -
  B6S64_RS10375 (B6S64_10375) - 2044704..2045896 (-) 1193 Protein_1937 heme biosynthesis protein HemY -
  B6S64_RS10380 (B6S64_10380) - 2045906..2046745 (-) 840 WP_001230204.1 hypothetical protein -
  B6S64_RS10385 (B6S64_10385) - 2046754..2047521 (-) 768 WP_000897421.1 uroporphyrinogen-III synthase -
  B6S64_RS10390 (B6S64_10390) hemC 2047526..2048443 (-) 918 WP_031944971.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=224271 B6S64_RS10365 WP_000801427.1 2043735..2044061(-) (hns) [Acinetobacter baumannii strain 15A5]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=224271 B6S64_RS10365 WP_000801427.1 2043735..2044061(-) (hns) [Acinetobacter baumannii strain 15A5]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment