Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   B7D75_RS10260 Genome accession   NZ_CP020560
Coordinates   2142706..2143341 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas paraeruginosa strain Cr1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2137706..2148341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7D75_RS10245 (B7D75_10245) - 2138402..2139646 (+) 1245 WP_107113968.1 lipoprotein-releasing ABC transporter permease subunit -
  B7D75_RS10250 (B7D75_10250) - 2139747..2140280 (-) 534 WP_107113969.1 DUF2062 domain-containing protein -
  B7D75_RS10255 (B7D75_10255) comA 2140411..2142633 (+) 2223 WP_107113970.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B7D75_RS10260 (B7D75_10260) exbB 2142706..2143341 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  B7D75_RS10265 (B7D75_10265) - 2143338..2143778 (+) 441 WP_012075163.1 biopolymer transporter ExbD -
  B7D75_RS10270 (B7D75_10270) lpxK 2143778..2144776 (+) 999 WP_053813705.1 tetraacyldisaccharide 4'-kinase -
  B7D75_RS10275 (B7D75_10275) - 2144814..2144999 (+) 186 WP_003157522.1 Trm112 family protein -
  B7D75_RS10280 (B7D75_10280) kdsB 2144999..2145763 (+) 765 WP_012075164.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  B7D75_RS10285 (B7D75_10285) - 2145763..2146227 (+) 465 WP_012075165.1 low molecular weight protein-tyrosine-phosphatase -
  B7D75_RS10290 (B7D75_10290) murB 2146224..2147243 (+) 1020 WP_058130157.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=224120 B7D75_RS10260 WP_003091163.1 2142706..2143341(+) (exbB) [Pseudomonas paraeruginosa strain Cr1]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=224120 B7D75_RS10260 WP_003091163.1 2142706..2143341(+) (exbB) [Pseudomonas paraeruginosa strain Cr1]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCACTGGGCGAGATCCTCGCTGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCTTCCGGCGTCATCCACGAACTTGAGCGCTATCT
CAACGCCCTCGGCACCATCGCCGCGATGGCTCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCGCTGATCACCACGGCCGCC
GGCCTGCTGGTGGCGATCCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGTCGCGTCGACGAGCTGGTGATCGCCATGGA
ACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment