Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B6V90_RS00025 Genome accession   NZ_CP020554
Coordinates   5265..5831 (-) Length   188 a.a.
NCBI ID   WP_043558983.1    Uniprot ID   -
Organism   Parasaccharibacter apium strain G7_7_3c     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 265..10831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6V90_RS00005 - 1255..2718 (-) 1464 WP_081562377.1 mannitol dehydrogenase family protein -
  B6V90_RS00010 - 2791..3462 (-) 672 WP_052348991.1 HAD family phosphatase -
  B6V90_RS00015 - 3744..4526 (+) 783 WP_081562378.1 DUF421 domain-containing protein -
  B6V90_RS00020 - 4527..5180 (-) 654 WP_219811875.1 hypothetical protein -
  B6V90_RS00025 ssb 5265..5831 (-) 567 WP_043558983.1 single-stranded DNA-binding protein Machinery gene
  B6V90_RS00030 uvrA 5969..8905 (+) 2937 WP_081562379.1 excinuclease ABC subunit UvrA -
  B6V90_RS00035 - 8920..9258 (+) 339 WP_043558985.1 multidrug efflux SMR transporter -
  B6V90_RS00040 - 9262..9807 (+) 546 WP_232317246.1 DUF2946 family protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20042.69 Da        Isoelectric Point: 5.0784

>NTDB_id=224049 B6V90_RS00025 WP_043558983.1 5265..5831(-) (ssb) [Parasaccharibacter apium strain G7_7_3c]
MAGSVNKVILVGNLGRDPEVRNTQSGSKIVNLAIATSDTWNDRNTGERRDRTEWHRVVIFNERVGDVAERYLRKGRKVYI
EGELRTRKWTDQQGVEKYTTEVVIDRFRGNLVLLDSQRGGGDGGGYGDDGYDGGYGDGGSNWAGGGSAPAGRGGAGGRGQ
QGGNFGGGAGWDSSSGQGDQALDDEIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=224049 B6V90_RS00025 WP_043558983.1 5265..5831(-) (ssb) [Parasaccharibacter apium strain G7_7_3c]
ATGGCAGGTAGCGTAAACAAGGTCATTCTGGTGGGAAATCTTGGGCGTGACCCGGAGGTCCGGAACACCCAGTCCGGCAG
CAAGATCGTCAATCTGGCTATCGCTACCAGCGATACGTGGAACGACCGCAATACAGGAGAGCGGCGTGACCGTACGGAAT
GGCACCGTGTCGTCATTTTCAACGAGCGTGTCGGTGATGTGGCGGAACGTTATCTGCGCAAGGGCCGCAAGGTTTATATC
GAAGGCGAGCTGCGTACCCGCAAGTGGACGGACCAGCAGGGCGTGGAGAAATACACGACCGAGGTTGTGATCGATCGCTT
CCGTGGCAATCTTGTCCTGCTGGACAGCCAGCGTGGCGGTGGTGACGGCGGCGGCTATGGTGATGATGGTTATGACGGTG
GTTATGGTGATGGCGGCAGCAACTGGGCTGGTGGCGGGTCCGCTCCGGCGGGCCGTGGCGGTGCCGGTGGTCGTGGTCAG
CAGGGTGGCAACTTCGGTGGCGGTGCTGGCTGGGACAGTTCTTCCGGGCAGGGTGATCAGGCGCTGGATGACGAGATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.5

100

0.484
  ssb Vibrio cholerae strain A1552

42.632

100

0.431

Multiple sequence alignment