Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   B5S57_RS15600 Genome accession   NZ_CP020534
Coordinates   2140779..2142173 (-) Length   464 a.a.
NCBI ID   WP_107489903.1    Uniprot ID   -
Organism   Vibrio anguillarum strain 425     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2135779..2147173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5S57_RS15565 (B5S57_15435) moaE 2136447..2136917 (-) 471 WP_038148363.1 molybdopterin synthase catalytic subunit MoaE -
  B5S57_RS15570 (B5S57_15440) moaD 2136920..2137165 (-) 246 WP_010320680.1 molybdopterin synthase sulfur carrier subunit -
  B5S57_RS15575 (B5S57_15445) moaC 2137158..2137658 (-) 501 WP_010320681.1 cyclic pyranopterin monophosphate synthase MoaC -
  B5S57_RS15580 (B5S57_15450) moaB 2137669..2138181 (-) 513 WP_010320682.1 molybdenum cofactor biosynthesis protein B -
  B5S57_RS15585 (B5S57_15455) moaA 2138248..2139237 (-) 990 WP_026028246.1 GTP 3',8-cyclase MoaA -
  B5S57_RS15590 (B5S57_15460) - 2139549..2140439 (+) 891 WP_013857260.1 YvcK family protein -
  B5S57_RS15595 (B5S57_15465) luxU 2140436..2140774 (-) 339 WP_013857261.1 quorum-sensing phosphorelay protein LuxU -
  B5S57_RS15600 (B5S57_15470) luxO 2140779..2142173 (-) 1395 WP_107489903.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  B5S57_RS15605 (B5S57_15475) uvrB 2142415..2144445 (-) 2031 WP_041769234.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51758.13 Da        Isoelectric Point: 6.1965

>NTDB_id=223958 B5S57_RS15600 WP_107489903.1 2140779..2142173(-) (luxO) [Vibrio anguillarum strain 425]
MQPDFSLQKAKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLAHREPDLILLDLRLPDMTGMDVLHAVKSHY
PNVPVIFMTAHGSVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEAGNPGNQNYQGFIGSSQTMQSVYRTIDSA
ASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLF
LDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDD
VIEIAYSLLGFMSKEEGKGFVRLAPEVVERFTRYEWPGNVRQLQNVLRNVVVLNHGNEIELSMLPPPLNQVVDNKIRLAN
LTTETRKENITVHDIFPLWMTEKQAIEQAIEACDGNIPKAASYLDVSPSTIYRKLQAWNSRENS

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=223958 B5S57_RS15600 WP_107489903.1 2140779..2142173(-) (luxO) [Vibrio anguillarum strain 425]
ATGCAACCTGACTTTTCTCTACAAAAGGCTAAATATCTTTTGATGGTGGAAGATACGGCTTCCGTTGCGGCGCTGTATCG
TTCATACCTCACCCCCCTTGAAATCGATATCAATATTGTTGGTACAGGTCGTGATGCGATAGAGAGTTTAGCTCACCGAG
AGCCGGACCTCATATTGCTGGATCTTCGATTACCCGATATGACGGGCATGGACGTTTTACATGCTGTGAAAAGTCACTAC
CCCAATGTGCCAGTGATATTCATGACCGCTCATGGTTCGGTGGAAGCGATGCGTCACGGTGCCCAAGATTTCTTGATCAA
ACCTTGTGAAGCAGACCGCTTGCGCGTCACGGTTAACAACGCCATACGTAAAGCTAGCAAACTAAAAAATGAGGCTGGTA
ACCCGGGTAATCAGAACTACCAAGGTTTTATCGGCAGCAGTCAAACCATGCAATCAGTCTATCGAACCATTGACTCAGCG
GCCTCCAGTAAAGCTAGTATTTTTATTACTGGCGAAAGTGGTACGGGTAAAGAGGTGTGCGCAGAAGCGATTCATGCGGC
CAGTAAACGTGGCGATAAACCCTTCATTGCGATTAACTGCGCCGCCATTCCTAAAGACTTAATAGAGAGTGAACTCTTTG
GCCACGTGAAAGGCGCATTTACTGGCGCAGCGACCGATCGCCAAGGCGCAGCCGAGTTGGCTGATGGCGGCACACTGTTT
TTGGATGAACTGTGTGAAATGGATTTGGATTTGCAGACCAAGCTGTTGCGCTTTATCCAAACGGGCACATTCCAGAAAGT
GGGCTCATCGAAGATGAAAAGTGTCGATGTTCGTTTTGTCTGCGCTACCAACCGCGATCCATGGAAAGAGGTACAAGAGG
GTCGTTTTCGTGAAGATTTGTACTATCGTCTTTATGTGATCCCATTGCATTTACCACCGCTACGCGAGCGAGGCGATGAC
GTTATTGAAATTGCTTACTCTTTGCTCGGCTTTATGTCTAAAGAAGAAGGCAAAGGTTTTGTCCGCTTAGCGCCAGAGGT
TGTGGAGCGTTTTACGCGCTATGAATGGCCGGGTAATGTGCGTCAACTGCAAAACGTGTTGCGGAATGTGGTGGTATTGA
ACCACGGCAACGAGATCGAACTGAGCATGTTACCGCCACCGCTAAATCAAGTCGTGGATAACAAGATCCGATTAGCAAAC
CTAACGACGGAAACGCGCAAGGAAAATATAACCGTGCACGATATTTTTCCTTTATGGATGACGGAAAAGCAAGCCATCGA
ACAAGCGATAGAAGCGTGTGATGGTAATATTCCTAAAGCAGCCAGTTATTTAGACGTTAGCCCTTCAACGATCTACCGCA
AGCTTCAAGCGTGGAACAGTAGAGAGAACTCATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-118)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.751

96.767

0.849
  pilR Pseudomonas aeruginosa PAK

37.527

99.353

0.373

Multiple sequence alignment