Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BVH57_RS00755 Genome accession   NZ_CP020464
Coordinates   158247..158837 (-) Length   196 a.a.
NCBI ID   WP_005709832.1    Uniprot ID   A0A0J6XXP0
Organism   Lacticaseibacillus rhamnosus strain Pen     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 153247..163837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH57_RS00720 (BVH57_00720) - 153539..153964 (+) 426 WP_005709835.1 CPBP family intramembrane metalloprotease -
  BVH57_RS00725 (BVH57_00725) - 154043..154237 (-) 195 WP_005685667.1 hypothetical protein -
  BVH57_RS00730 (BVH57_00730) cydB 154277..155296 (-) 1020 WP_005709834.1 cytochrome d ubiquinol oxidase subunit II -
  BVH57_RS00735 (BVH57_00735) - 155289..156767 (-) 1479 WP_005709833.1 cytochrome ubiquinol oxidase subunit I -
  BVH57_RS00740 (BVH57_00740) - 157113..157619 (+) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  BVH57_RS00750 (BVH57_00750) rpsR 157920..158156 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  BVH57_RS00755 (BVH57_00755) ssb 158247..158837 (-) 591 WP_005709832.1 single-stranded DNA-binding protein Machinery gene
  BVH57_RS00760 (BVH57_00760) rpsF 158867..159163 (-) 297 WP_005685677.1 30S ribosomal protein S6 -
  BVH57_RS00765 (BVH57_00765) ssb 159290..159721 (-) 432 WP_005709831.1 single-stranded DNA-binding protein -
  BVH57_RS00770 (BVH57_00770) deoC 159831..160535 (+) 705 WP_005709830.1 deoxyribose-phosphate aldolase -
  BVH57_RS00775 (BVH57_00775) gyrA 160609..163221 (-) 2613 WP_005709828.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20932.66 Da        Isoelectric Point: 4.9056

>NTDB_id=223413 BVH57_RS00755 WP_005709832.1 158247..158837(-) (ssb) [Lacticaseibacillus rhamnosus strain Pen]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=223413 BVH57_RS00755 WP_005709832.1 158247..158837(-) (ssb) [Lacticaseibacillus rhamnosus strain Pen]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCGGCGGAGAATTTCGCAAACTTCACCAAGAAAGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GTAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6XXP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.204

100

0.602
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.749

100

0.505

Multiple sequence alignment