Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RK79_RS04100 Genome accession   NZ_CP026067
Coordinates   845908..846753 (+) Length   281 a.a.
NCBI ID   WP_001621659.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_21     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 840908..851753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK79_RS04080 (RK79_004080) - 841174..843015 (-) 1842 WP_000077330.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  RK79_RS04085 (RK79_004085) metC 842984..844144 (-) 1161 WP_000175850.1 cystathionine beta-lyase MetC -
  RK79_RS04090 (RK79_004090) - 844141..845244 (-) 1104 WP_000655692.1 PLP-dependent transferase -
  RK79_RS04100 (RK79_004100) spo0J 845908..846753 (+) 846 WP_001621659.1 ParB/RepB/Spo0J family partition protein Regulator
  RK79_RS04105 (RK79_004105) - 846907..847788 (+) 882 WP_000373075.1 mechanosensitive ion channel family protein -
  RK79_RS04110 (RK79_004110) - 847818..848021 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  RK79_RS04115 (RK79_004115) ychF 848033..849130 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  RK79_RS04120 (RK79_004120) - 849216..849407 (-) 192 WP_001052483.1 hypothetical protein -
  RK79_RS04130 (RK79_004130) rpsF 849651..849947 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  RK79_RS04135 (RK79_004135) ssbA 849968..850471 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  RK79_RS04140 (RK79_004140) rpsR 850523..850765 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32797.82 Da        Isoelectric Point: 10.0000

>NTDB_id=223404 RK79_RS04100 WP_001621659.1 845908..846753(+) (spo0J) [Staphylococcus aureus strain FDAARGOS_21]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIEQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=223404 RK79_RS04100 WP_001621659.1 845908..846753(+) (spo0J) [Staphylococcus aureus strain FDAARGOS_21]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTTAGAAAAACAGTACAAGGCTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAAAGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTCAGATATTTAGAAAATCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGCTTCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCACAAGATGA
CTTTGTGAGAATCATTGAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(22-109)

HTH domain found in ParB protein (HTH_ParB)

(161-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381

Multiple sequence alignment