Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OB_RS09640 Genome accession   NC_004193
Coordinates   1908613..1910307 (-) Length   564 a.a.
NCBI ID   WP_011066271.1    Uniprot ID   Q8CXE3
Organism   Oceanobacillus iheyensis HTE831     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1903613..1915307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB_RS09620 (OB3525) - 1904089..1904328 (+) 240 WP_011066267.1 DUF2627 domain-containing protein -
  OB_RS09625 (OB1871) - 1904419..1905813 (+) 1395 WP_011066268.1 aspartate kinase -
  OB_RS09630 (OB1872) spo0A 1906010..1906792 (-) 783 WP_011066269.1 sporulation transcription factor Spo0A -
  OB_RS09635 (OB1873) spoIVB 1907152..1908357 (-) 1206 WP_011066270.1 SpoIVB peptidase -
  OB_RS09640 (OB1874) recN 1908613..1910307 (-) 1695 WP_011066271.1 DNA repair protein RecN Machinery gene
  OB_RS09645 (OB1875) ahrC 1910335..1910784 (-) 450 WP_011066272.1 transcriptional regulator AhrC/ArgR -
  OB_RS09650 (OB1876) - 1910805..1911614 (-) 810 WP_011066273.1 TlyA family RNA methyltransferase -
  OB_RS09655 (OB1877) - 1911617..1912501 (-) 885 WP_011066274.1 polyprenyl synthetase family protein -
  OB_RS09660 (OB1878) - 1912498..1912734 (-) 237 WP_011066275.1 exodeoxyribonuclease VII small subunit -
  OB_RS09665 (OB1879) xseA 1912709..1914076 (-) 1368 WP_011066276.1 exodeoxyribonuclease VII large subunit -
  OB_RS09670 (OB1880) folD 1914066..1914923 (-) 858 WP_011066277.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 64434.54 Da        Isoelectric Point: 4.7060

>NTDB_id=22335 OB_RS09640 WP_011066271.1 1908613..1910307(-) (recN) [Oceanobacillus iheyensis HTE831]
MLTELSIQDFAIIDDISITFNDGLTVLTGETGAGKSIIIDAIQLLAGGRGSVDYVRHGTKKATIEGLFFISNNNHPIYHT
GNEFGIEIQDEQVVLQRIITSSGKSICRVNGKLVTLAILREFGKTLIDIHSQHETQSLMDVDHHIDFLDMYDYKAIEETK
SEYRKIYDALETVKRKYRKLNDNEQEMAQRLDLLQFQQQELEQAQLQPEEDIEIDEEIHQLANYEKLHRALNDAYYALYG
EQRGLDFVKQAQLALETNQDVDPFITEKNEEIANHFYALEELAYSLRNHLDGLQYNPERLNELEQRKDELNKLKRKYGTT
VEEMLSYLAKIDEEIEQITNRDTHVNALVAEIEELEKDAMLEAEQLHHLRALAAENLVNEIHQELKDLYLENASFAIDFE
DATPPKLTKNGYDKVRFLISTNVGEPLKDLSKVASGGELSRFMLALKKIFSKHQGITSVIFDEVDTGVSGRVAQAIAEKM
HQVSTDSQVLCITHLPQVAAMADTHKFIRKNEKSNRTYTSVQELNEEEQIDELSRMITGTKLTDTAKSHAREMLELASNF
KVKN

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=22335 OB_RS09640 WP_011066271.1 1908613..1910307(-) (recN) [Oceanobacillus iheyensis HTE831]
GTGTTAACCGAATTATCAATTCAAGATTTTGCTATTATCGATGACATATCTATTACTTTTAATGACGGACTAACGGTTTT
AACAGGTGAAACGGGAGCTGGAAAATCCATTATAATTGATGCAATTCAATTATTAGCAGGTGGAAGAGGTTCTGTAGACT
ATGTCAGACATGGTACAAAAAAAGCAACAATTGAAGGATTGTTTTTTATTTCGAACAACAATCATCCTATATATCATACA
GGTAATGAATTTGGAATAGAGATACAAGACGAACAAGTTGTATTACAACGGATCATTACTTCTTCTGGTAAAAGTATTTG
CCGCGTTAATGGTAAATTAGTTACTTTAGCTATATTACGTGAATTTGGTAAAACATTAATTGATATTCATAGTCAACACG
AAACACAGTCATTAATGGATGTTGACCATCATATTGACTTTCTTGATATGTATGACTACAAGGCGATCGAAGAAACAAAG
TCTGAATACAGAAAAATATATGATGCACTTGAAACAGTAAAACGTAAGTATCGTAAGTTAAATGATAATGAGCAAGAGAT
GGCACAACGACTTGATTTGTTACAATTTCAACAGCAGGAATTGGAACAAGCGCAATTACAGCCTGAAGAAGACATTGAAA
TAGATGAAGAAATTCATCAGCTTGCTAATTATGAAAAATTACATCGAGCATTAAATGATGCTTATTACGCTCTTTATGGG
GAACAACGGGGCCTTGATTTTGTGAAACAAGCGCAACTAGCATTGGAAACTAATCAAGATGTTGATCCGTTTATTACTGA
AAAAAATGAAGAAATCGCAAACCATTTTTATGCTTTAGAAGAGTTGGCATACTCATTACGGAACCATTTAGATGGCCTAC
AATATAACCCTGAACGATTAAATGAATTAGAGCAAAGAAAAGATGAATTAAATAAGTTAAAACGAAAATATGGTACCACA
GTGGAAGAAATGTTATCTTATTTAGCTAAAATTGATGAAGAAATAGAGCAAATAACGAATCGTGATACACATGTTAATGC
ATTAGTTGCGGAAATAGAAGAACTCGAAAAAGATGCTATGTTAGAAGCAGAACAACTCCATCATTTACGCGCTCTTGCAG
CAGAAAACTTGGTGAATGAAATACATCAAGAGCTCAAAGATTTATACTTAGAAAATGCATCATTTGCTATTGACTTTGAA
GATGCAACACCACCAAAGTTAACAAAAAATGGATATGATAAAGTTCGTTTTTTGATTTCAACGAATGTTGGCGAACCATT
GAAAGATTTATCAAAAGTAGCATCAGGTGGAGAATTATCAAGATTTATGCTTGCACTTAAAAAAATATTTTCCAAACATC
AGGGTATTACCAGTGTGATTTTCGACGAAGTGGATACTGGAGTGAGTGGACGTGTCGCACAAGCTATTGCTGAAAAAATG
CATCAAGTCTCTACAGATTCTCAAGTACTTTGTATTACTCACCTTCCCCAAGTAGCAGCAATGGCAGATACTCATAAGTT
TATTCGGAAAAATGAGAAGTCAAATCGCACATACACAAGCGTTCAAGAATTAAATGAGGAAGAACAGATTGATGAATTAA
GTCGCATGATTACAGGTACGAAACTTACCGACACTGCAAAAAGTCATGCAAGAGAAATGCTAGAGCTTGCATCAAACTTT
AAAGTAAAAAATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8CXE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.394

100

0.523

Multiple sequence alignment