Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   A6J88_RS25610 Genome accession   NZ_CP020452
Coordinates   2308363..2310120 (-) Length   585 a.a.
NCBI ID   WP_080614276.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_260     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2303363..2315120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J88_RS25590 (A6J88_11380) tilS 2303833..2305176 (-) 1344 WP_080614274.1 tRNA lysidine(34) synthetase TilS -
  A6J88_RS25595 (A6J88_11385) - 2305270..2306229 (-) 960 WP_039410222.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  A6J88_RS25600 (A6J88_11390) - 2306449..2306850 (+) 402 WP_003758524.1 RNA-binding S4 domain-containing protein -
  A6J88_RS25605 (A6J88_11395) - 2307000..2308118 (-) 1119 WP_080614275.1 hypothetical protein -
  A6J88_RS25610 (A6J88_11400) recD 2308363..2310120 (-) 1758 WP_080614276.1 exodeoxyribonuclease V subunit alpha Machinery gene
  A6J88_RS25615 (A6J88_11405) - 2310371..2310931 (-) 561 WP_080614277.1 hypothetical protein -
  A6J88_RS25620 (A6J88_11410) - 2311115..2311960 (+) 846 WP_080614278.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  A6J88_RS25625 (A6J88_11415) dinB 2312055..2313113 (+) 1059 WP_080614279.1 DNA polymerase IV -
  A6J88_RS25630 (A6J88_11420) - 2313243..2313974 (+) 732 WP_003765388.1 phosphoadenylyl-sulfate reductase -
  A6J88_RS25640 (A6J88_11430) cah 2314293..2315051 (+) 759 WP_080614281.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 63878.08 Da        Isoelectric Point: 6.0101

>NTDB_id=223318 A6J88_RS25610 WP_080614276.1 2308363..2310120(-) (recD) [Neisseria mucosa strain FDAARGOS_260]
MAENTADDLNLAAAQAAGHLLERCVPEHAAVLTPYVLRLFAALQNGHSFVWLDEGEAEELAGLAPTVGQSASPLVLQGKK
LFLGRMWQLEHDLTAEIKRLAEAEVEPVDWMSASQNLSGWFADKGSAGQRDAAGLALLQAFMLITGGPGTGKTTTVAKLL
GLICTNSATRLPRIALAAPTGKAAAHMARALHRAVDGFEIPDAVRNHLSALEGQTVHRLLKLRPPQMLPAFDGNRPLPLD
VLVVDEASMLDVSLLLHLLRAIPSGCRVIFLGDEFQLPSVGVGAVLAALSRRTVLDKETAEQLSIYLPEHGFPVEENPPA
LSQNVAQLKVSHRFGADSGIGCLARAVVSGKSGEGWVQFALFPDELEIREGRLKQQAELLYRKHEKYWQAVDKNDVALAF
GHAADVVVLAAWRQDAEAFNEEYCRYLQRKHRAGADTPWFAGQIIMIARNDYTLEVFNGDIGLIMPDAESANGLAAYFLN
ADGFKKIAISRLPQFDSAFAMTVHKSQGSEYREVWLLPPSGKIEQGGDDALSGLNNALLYTAITRARERFVFWGNEEQWR
MAVETRKTRRTALGDILDAMFVPKA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=223318 A6J88_RS25610 WP_080614276.1 2308363..2310120(-) (recD) [Neisseria mucosa strain FDAARGOS_260]
ATGGCTGAGAATACTGCCGATGATTTGAACCTTGCCGCCGCACAAGCGGCCGGGCATTTGCTGGAGCGTTGCGTACCGGA
GCATGCTGCGGTGCTGACGCCTTATGTGTTGCGGCTGTTTGCGGCTTTGCAGAACGGGCATTCGTTTGTGTGGCTGGATG
AGGGCGAGGCGGAGGAATTGGCGGGATTGGCGCCGACGGTCGGGCAGAGCGCGTCGCCGTTGGTGTTGCAGGGCAAAAAG
CTGTTTTTGGGGCGGATGTGGCAACTCGAGCATGATTTGACGGCTGAAATCAAGCGTTTGGCAGAAGCGGAAGTCGAGCC
TGTGGATTGGATGAGCGCGTCGCAAAACTTGTCCGGCTGGTTTGCCGACAAAGGCAGCGCAGGGCAGCGGGATGCGGCGG
GGCTTGCCCTGCTTCAAGCGTTTATGTTGATTACGGGCGGGCCAGGTACGGGTAAAACGACGACTGTGGCGAAACTTTTG
GGGCTGATTTGCACCAACTCTGCCACGCGCCTGCCGCGTATCGCTCTGGCCGCGCCGACGGGCAAGGCTGCGGCGCATAT
GGCGCGCGCGCTGCATCGTGCGGTGGACGGTTTCGAGATACCTGACGCGGTGCGCAATCACTTGTCCGCGCTGGAAGGAC
AGACGGTCCACCGCCTTTTGAAACTGCGCCCGCCGCAAATGCTGCCTGCGTTTGACGGCAATCGCCCGCTGCCTTTGGAT
GTATTGGTGGTGGATGAGGCTTCGATGTTGGATGTTTCCCTGCTGCTTCACTTGCTGCGTGCGATTCCGTCGGGCTGCCG
CGTGATTTTTTTGGGTGATGAGTTCCAACTGCCTTCGGTCGGTGTCGGCGCGGTGTTGGCGGCGTTGTCGAGACGGACGG
TTTTGGATAAGGAGACGGCGGAGCAACTGAGTATTTATCTGCCGGAACACGGTTTCCCCGTGGAGGAAAATCCGCCGGCT
TTGTCGCAAAACGTCGCGCAACTGAAGGTCAGCCACCGTTTCGGCGCAGACAGCGGCATCGGTTGCTTGGCGAGGGCGGT
CGTATCGGGCAAGAGCGGGGAAGGTTGGGTGCAGTTTGCCTTGTTCCCCGACGAGCTGGAAATCCGCGAAGGTCGTCTGA
AACAGCAGGCGGAGCTGCTTTACCGCAAACACGAAAAATACTGGCAGGCAGTCGATAAAAACGATGTGGCGCTGGCGTTC
GGACACGCGGCGGATGTGGTCGTTTTGGCGGCATGGCGGCAGGACGCGGAGGCGTTCAACGAAGAGTATTGCCGTTATCT
GCAACGCAAACATCGGGCGGGCGCGGATACGCCGTGGTTCGCGGGGCAAATCATCATGATTGCGCGCAACGACTATACGC
TGGAAGTGTTCAACGGCGACATCGGGCTGATTATGCCCGACGCGGAATCGGCGAACGGCTTGGCGGCGTATTTTCTGAAT
GCGGACGGTTTCAAAAAAATCGCCATCAGCCGCCTGCCGCAGTTTGATTCCGCGTTCGCCATGACTGTGCATAAAAGCCA
GGGTTCGGAATATCGGGAAGTCTGGCTGCTGCCGCCGTCGGGGAAAATAGAGCAGGGCGGGGATGACGCGCTGTCGGGCT
TAAACAATGCGCTTCTCTACACCGCCATCACCCGCGCACGGGAACGCTTCGTCTTTTGGGGAAATGAAGAGCAATGGCGG
ATGGCGGTGGAAACCCGCAAAACCCGCCGCACGGCATTGGGCGACATCTTGGACGCGATGTTCGTGCCGAAAGCTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(126-291)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(498-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

63.167

96.068

0.607

Multiple sequence alignment