Detailed information    

insolico Bioinformatically predicted

Overview


Name   recB   Type   Machinery gene
Locus tag   A6J88_RS23955 Genome accession   NZ_CP020452
Coordinates   1969380..1973015 (-) Length   1211 a.a.
NCBI ID   WP_105165202.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_260     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1950150..1998136 1969380..1973015 within 0
IS/Tn 1973511..1973621 1969380..1973015 flank 496


Gene organization within MGE regions


Location: 1950150..1998136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J88_RS23855 (A6J88_09670) - 1951771..1952121 (+) 351 WP_060975139.1 MmcQ/YjbR family DNA-binding protein -
  A6J88_RS23860 (A6J88_09675) - 1952159..1952851 (+) 693 WP_060975138.1 aspartate/glutamate racemase family protein -
  A6J88_RS23865 (A6J88_09680) - 1953164..1955455 (+) 2292 WP_240593905.1 TonB-dependent siderophore receptor -
  A6J88_RS23870 (A6J88_09685) - 1955600..1956478 (+) 879 WP_080614140.1 EamA family transporter -
  A6J88_RS23875 (A6J88_09690) - 1956592..1957548 (-) 957 WP_070636376.1 IS110 family transposase -
  A6J88_RS23880 (A6J88_09695) - 1957923..1959095 (-) 1173 WP_070636374.1 zonular occludens toxin domain-containing protein -
  A6J88_RS23885 (A6J88_09700) - 1959098..1959379 (-) 282 WP_070461276.1 DUF2523 family protein -
  A6J88_RS23890 (A6J88_09705) - 1959388..1961061 (-) 1674 WP_080613523.1 IgG-binding virulence factor TspB family protein -
  A6J88_RS23900 (A6J88_09715) - 1961439..1961750 (-) 312 WP_070636370.1 hypothetical protein -
  A6J88_RS23905 (A6J88_09720) - 1961766..1962008 (-) 243 WP_070636368.1 hypothetical protein -
  A6J88_RS23910 (A6J88_09725) - 1962239..1962442 (-) 204 WP_070636366.1 hypothetical protein -
  A6J88_RS23915 (A6J88_09730) - 1962456..1962767 (-) 312 WP_016686802.1 hypothetical protein -
  A6J88_RS23920 (A6J88_09735) - 1962781..1964082 (-) 1302 WP_070636391.1 replication initiation factor domain-containing protein -
  A6J88_RS23925 (A6J88_09740) - 1964105..1964335 (-) 231 WP_070636364.1 hypothetical protein -
  A6J88_RS23930 (A6J88_09745) - 1964484..1965380 (-) 897 WP_105165201.1 IS3 family transposase -
  A6J88_RS23935 (A6J88_09750) - 1965284..1965634 (-) 351 WP_240593908.1 helix-turn-helix domain-containing protein -
  A6J88_RS23940 (A6J88_09755) - 1965741..1967534 (-) 1794 WP_080614141.1 2-isopropylmalate synthase -
  A6J88_RS28770 - 1968348..1968458 (-) 111 Protein_1823 IS5/IS1182 family transposase -
  A6J88_RS23950 (A6J88_09765) - 1968458..1969250 (+) 793 WP_240593910.1 IS5 family transposase -
  A6J88_RS23955 (A6J88_09770) recB 1969380..1973015 (-) 3636 WP_105165202.1 exodeoxyribonuclease V subunit beta Machinery gene
  A6J88_RS23965 (A6J88_14230) - 1973520..1973621 (-) 102 Protein_1826 IS5/IS1182 family transposase -
  A6J88_RS23970 (A6J88_09775) - 1973693..1974700 (-) 1008 WP_080614143.1 2Fe-2S iron-sulfur cluster-binding protein -
  A6J88_RS23975 (A6J88_09780) - 1974784..1975416 (-) 633 WP_080614144.1 peptidoglycan-binding protein -
  A6J88_RS29145 (A6J88_09790) - 1975913..1976215 (-) 303 Protein_1829 winged helix domain-containing protein -
  A6J88_RS23990 (A6J88_09795) - 1976234..1976917 (-) 684 WP_080614145.1 suppressor of fused domain protein -
  A6J88_RS23995 (A6J88_09800) gatB 1977110..1978540 (-) 1431 WP_080614146.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  A6J88_RS24000 (A6J88_09805) - 1978646..1979518 (-) 873 WP_080614147.1 VirK/YbjX family protein -
  A6J88_RS24005 (A6J88_09810) gatA 1979518..1980975 (-) 1458 WP_080614148.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  A6J88_RS24010 (A6J88_09815) - 1981043..1982260 (-) 1218 WP_080614149.1 phospholipase D family protein -
  A6J88_RS24015 (A6J88_09820) gatC 1982392..1982682 (-) 291 WP_003778900.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  A6J88_RS24020 (A6J88_09825) - 1982910..1983947 (+) 1038 WP_070498168.1 rod shape-determining protein -
  A6J88_RS24025 (A6J88_09830) mreC 1983959..1984798 (+) 840 WP_080614150.1 rod shape-determining protein MreC -
  A6J88_RS24030 (A6J88_09835) mreD 1984806..1985309 (+) 504 WP_070441923.1 rod shape-determining protein MreD -
  A6J88_RS24035 (A6J88_09840) mrdA 1985319..1987358 (+) 2040 WP_080614151.1 penicillin-binding protein 2 -
  A6J88_RS24040 (A6J88_09845) rodA 1987351..1988514 (+) 1164 WP_080614152.1 rod shape-determining protein RodA -
  A6J88_RS24045 (A6J88_09850) - 1988526..1989182 (+) 657 WP_003741339.1 MarC family protein -
  A6J88_RS24050 (A6J88_09855) - 1989359..1989730 (+) 372 WP_045072303.1 hypothetical protein -
  A6J88_RS24055 (A6J88_09860) - 1989829..1990725 (-) 897 WP_099048466.1 IS3 family transposase -
  A6J88_RS24060 (A6J88_09865) - 1990629..1990979 (-) 351 WP_240593912.1 helix-turn-helix domain-containing protein -
  A6J88_RS24065 (A6J88_09870) - 1991058..1991735 (-) 678 WP_193617298.1 GAD-like domain-containing protein -
  A6J88_RS24070 (A6J88_09875) - 1991992..1993236 (-) 1245 WP_240593914.1 type VI immunity family protein -
  A6J88_RS24075 (A6J88_09880) - 1993265..1993582 (-) 318 WP_146107590.1 hypothetical protein -
  A6J88_RS24080 (A6J88_09885) - 1993714..1995018 (-) 1305 WP_080614156.1 type VI immunity family protein -
  A6J88_RS24085 (A6J88_09890) - 1994987..1996468 (-) 1482 WP_080614157.1 hypothetical protein -
  A6J88_RS24090 (A6J88_09895) - 1996472..1997989 (-) 1518 WP_080614158.1 DUF2345 domain-containing protein -

Sequence


Protein


Download         Length: 1211 a.a.        Molecular weight: 136610.54 Da        Isoelectric Point: 5.0282

>NTDB_id=223312 A6J88_RS23955 WP_105165202.1 1969380..1973015(-) (recB) [Neisseria mucosa strain FDAARGOS_260]
MSITIPAFDPLSIPIAGTNLIEASAGTGKTYGIAALFTRLVVLEQMPVESILTVTFTKAATAELKTRLRARLDEVLQALE
SVEDTDNLSDDLEAYCRDNHPGDVFLTGLLKQALAQESRARLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCRAPM
DVELTEDNRDRLLIPAQDFWRDRIVDHPVLAKLVFQRRQTPQTMLAAIQKFVSRPYLVFRRPEADLVAAQENFRKTWEKV
RSKLDALEETFWRIRPILNGQSYQEKTFKTVFLELHSASQSNALPSFSKTTAEKLPMFAVEALASKVKKGNTPDAAAFAD
LQILANLGADSAAIAQAEEETLTLLHLDLLDHLNASLSEQKKSKRERGFDDLLLDVYDALTDNPQADSLAQAVAQNWRIA
LIDEFQDTDPLQYEIFRKIFISQNKPLFLVGDPKQAIYSFRGADIYAYLQAAADAQHSYTLATNYRSHAKLINGIGALFR
CKNRPFVLDGIDYTEVGAARSESRLSPPQTAIQIRWLNGKDDEVLNKDILRRRASEYCADEIAHTLNEAAEGRLKFKDRP
VVSGDISVLVRTFNEGVMVAKALKTRGIQSVLLSRESVFTTPEALALAALLDYWLNPGQIGSLRFVLSGTLFNYDAQALY
QLNRNEAELLNWINTAAESVTIWRKSGIYAALQHFSSLHGIETGLLARGDERGLTNFHQLLECLSEEEGQSLSPAALHQW
LNDQISLAQDRSIGESGLLRLESDEALVKIVTMHASKGLQYPLVYCPFVWDAKDMKPADWQILHTADHTTELLAKSQLND
EDRIHLADEEMAERLRLLYVALTRAEEQLVLYAAHCGDTVDSPFAYLLEGSADSNRADTRRAYDQERKANKALGELQMLK
NNWLRFLNNPPEHTDFSFSEDAPQPAAAQNRHLSDDLYQAAVIPARGFQFIRHTSFTSLSRQVKTRDDEREELQPALDPA
ETADKTERSSENTLPVSDDLPNTDIHHFPRGANAGVCLHEMLEKFDFAQSAENQSSLIAETLTRYGFDLLWTDAVKQMLD
TCRKTRLVAQSLSEIPPERRLPEMGFTLYTEDFKLHDLRRWFARENSSLPPECIEAAERLDFQDVQGFLNGFIDMVCQDS
DDLVCIIDYKSNHLGDSAEAYTQQAMNEAVADHHYYLQALIYAIAVARYFKLRGKPLPKIAIRYLFLRGLDGTDNGVWQW
NLDTESLAQWL

Nucleotide


Download         Length: 3636 bp        

>NTDB_id=223312 A6J88_RS23955 WP_105165202.1 1969380..1973015(-) (recB) [Neisseria mucosa strain FDAARGOS_260]
ATGTCAATCACCATTCCAGCCTTCGATCCCCTAAGCATCCCCATAGCAGGTACCAATCTGATTGAAGCCTCTGCCGGCAC
GGGCAAAACCTACGGCATTGCGGCTTTATTCACGCGTTTGGTCGTGCTTGAGCAGATGCCGGTCGAAAGCATTTTGACCG
TTACTTTTACCAAGGCGGCAACGGCGGAATTGAAAACCCGTTTGCGCGCACGTTTGGACGAAGTATTGCAGGCTTTGGAG
AGCGTGGAGGATACGGACAATCTTTCAGACGACCTTGAAGCATACTGCCGAGACAATCATCCGGGCGATGTGTTTCTGAC
CGGTTTGCTCAAACAGGCATTGGCTCAAGAAAGTCGGGCGCGGCTGATTGTCCGCCTCAAGGCTGCCATCGGGCAATTCG
ACAACGCCGCGATTTATACCATTCACGGCTTCTGCCAACGCATTTTGCGCGATTATGCATTTTTGTGCCGCGCGCCTATG
GATGTTGAGTTGACCGAAGACAACCGCGACCGCCTGCTGATTCCCGCTCAAGATTTTTGGCGCGACCGCATCGTCGATCA
TCCCGTTTTAGCGAAGTTGGTATTCCAACGCCGCCAAACGCCGCAAACCATGCTGGCGGCAATACAAAAATTCGTCAGCC
GTCCGTATTTGGTTTTCAGACGACCCGAAGCAGACTTAGTCGCTGCGCAGGAAAACTTTCGGAAAACATGGGAAAAAGTG
CGTTCCAAACTGGACGCTTTGGAAGAAACATTCTGGCGCATCCGTCCGATATTAAATGGACAATCCTATCAAGAAAAAAC
ATTCAAAACCGTCTTTCTCGAACTCCACTCCGCCTCTCAATCCAATGCCCTTCCTTCTTTTAGCAAAACGACGGCAGAAA
AGCTGCCTATGTTTGCCGTAGAAGCTTTAGCGTCCAAAGTCAAAAAAGGCAATACTCCCGATGCTGCCGCCTTTGCCGAT
TTGCAGATATTGGCGAATCTCGGCGCGGATTCGGCTGCCATCGCGCAAGCCGAAGAAGAGACGCTTACCCTGCTCCACCT
CGACCTACTCGACCATCTTAATGCCAGTCTGAGCGAGCAGAAAAAATCCAAGCGCGAACGCGGTTTCGACGATTTACTGC
TTGATGTTTATGACGCATTGACCGACAACCCGCAGGCAGACTCGCTGGCTCAGGCAGTAGCGCAGAACTGGCGCATCGCA
TTGATTGACGAATTTCAAGACACCGACCCGCTGCAATACGAAATCTTCCGAAAAATCTTTATCAGCCAAAACAAGCCCTT
ATTCTTAGTCGGCGACCCGAAACAAGCGATTTACAGCTTTCGCGGCGCCGACATTTACGCCTATCTGCAAGCCGCAGCCG
ACGCGCAACACAGCTACACGCTCGCGACCAATTACCGCAGCCATGCCAAGCTGATTAACGGCATAGGCGCATTGTTCCGC
TGCAAAAACCGCCCTTTCGTCTTGGACGGCATAGACTATACCGAAGTCGGCGCCGCACGTTCCGAAAGCCGGCTTTCGCC
GCCCCAAACTGCCATACAGATACGCTGGCTCAACGGCAAAGACGACGAAGTACTCAACAAAGACATCTTGCGCCGCCGTG
CCTCCGAATATTGCGCCGACGAAATCGCCCACACGCTCAACGAAGCTGCCGAGGGTCGTCTGAAATTCAAAGACAGACCG
GTCGTTTCAGGCGATATTTCCGTCTTGGTCAGAACATTTAACGAAGGCGTGATGGTGGCAAAAGCGCTGAAAACGCGCGG
CATACAAAGCGTTTTGCTCTCAAGAGAATCGGTTTTCACCACGCCCGAAGCCCTCGCCCTTGCCGCGCTGTTGGATTATT
GGCTCAATCCCGGACAAATCGGCTCGCTGCGCTTTGTCTTATCCGGCACATTGTTCAATTATGACGCGCAAGCCCTGTAT
CAACTCAACCGCAACGAAGCCGAATTATTAAACTGGATAAACACCGCCGCCGAATCCGTTACCATTTGGCGGAAAAGCGG
GATTTATGCCGCTCTGCAACACTTCTCCTCGTTGCACGGCATCGAAACCGGATTACTTGCACGCGGTGACGAGCGCGGCC
TCACCAATTTCCATCAGCTTTTAGAGTGCCTCTCCGAAGAAGAAGGACAAAGCCTCAGCCCCGCCGCCCTGCATCAATGG
CTCAACGACCAAATCAGCCTGGCGCAAGACCGCTCTATCGGCGAATCAGGACTTTTACGGCTTGAAAGCGATGAAGCACT
GGTCAAAATTGTCACCATGCATGCCTCCAAAGGTTTGCAATATCCTTTGGTCTATTGCCCTTTCGTTTGGGACGCGAAAG
ACATGAAGCCCGCCGATTGGCAAATCCTCCACACCGCCGACCACACTACGGAACTGCTTGCCAAATCGCAACTCAACGAT
GAAGACCGCATCCACCTTGCCGACGAAGAAATGGCAGAACGCCTGCGCCTGCTGTACGTCGCGCTGACCCGTGCCGAAGA
GCAGCTTGTCCTTTATGCCGCCCATTGCGGTGATACCGTCGATTCCCCTTTTGCCTACTTGCTTGAAGGCAGCGCCGACA
GCAATCGGGCGGATACCCGCCGGGCCTATGACCAGGAACGCAAAGCAAACAAAGCCCTAGGCGAGCTGCAAATGCTGAAA
AACAACTGGCTGCGTTTCCTCAACAATCCCCCCGAACATACCGACTTCAGCTTTTCCGAAGACGCGCCGCAACCCGCTGC
CGCGCAAAACCGCCATCTTTCAGACGACCTCTATCAAGCCGCCGTTATCCCCGCCCGCGGATTTCAGTTCATCCGGCATA
CCAGCTTTACCAGCCTCAGCCGCCAAGTCAAAACCCGAGACGACGAACGCGAAGAATTACAACCCGCACTCGACCCCGCA
GAAACCGCCGACAAAACAGAAAGGTCGTCTGAAAACACCCTCCCCGTTTCAGACGACCTCCCGAATACCGACATCCACCA
TTTCCCGCGCGGCGCCAACGCCGGCGTCTGCCTGCATGAAATGTTGGAGAAATTCGACTTTGCCCAAAGCGCCGAAAACC
AAAGCAGCCTGATAGCCGAAACCTTGACCCGCTACGGCTTCGACCTACTTTGGACAGATGCCGTCAAACAAATGCTCGAC
ACCTGCCGCAAAACGCGCCTTGTTGCACAAAGCCTGTCTGAAATCCCACCCGAGCGCCGCCTTCCGGAAATGGGATTTAC
CCTCTACACCGAAGACTTCAAACTCCATGACCTGCGCCGCTGGTTTGCCCGCGAAAACAGCTCACTGCCGCCGGAATGTA
TCGAAGCCGCGGAAAGATTGGATTTCCAAGACGTACAAGGTTTTCTCAACGGCTTCATCGACATGGTCTGCCAAGATTCA
GACGACCTCGTATGCATCATCGACTACAAATCCAACCATCTGGGCGACAGCGCCGAAGCCTATACGCAACAAGCCATGAA
CGAAGCCGTAGCAGACCACCACTACTACCTGCAAGCGCTCATCTACGCCATCGCCGTAGCCCGCTATTTCAAACTGCGCG
GCAAACCGTTACCCAAAATCGCCATCCGATACCTCTTCCTGCGCGGATTGGATGGCACGGACAACGGCGTCTGGCAATGG
AACCTGGATACCGAATCCTTAGCACAATGGCTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

62.109

100

0.623


Multiple sequence alignment