Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A6J88_RS23430 Genome accession   NZ_CP020452
Coordinates   1866728..1867534 (+) Length   268 a.a.
NCBI ID   WP_070773265.1    Uniprot ID   A0A9X5YSZ8
Organism   Neisseria mucosa strain FDAARGOS_260     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1861728..1872534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J88_RS23405 (A6J88_09215) - 1862268..1863365 (+) 1098 WP_003742966.1 NnrS family protein -
  A6J88_RS23410 (A6J88_09220) yciA 1863479..1863916 (-) 438 WP_003742967.1 acyl-CoA thioester hydrolase YciA -
  A6J88_RS23415 (A6J88_09225) pgeF 1864021..1864794 (-) 774 WP_080614107.1 peptidoglycan editing factor PgeF -
  A6J88_RS29335 - 1864852..1865019 (+) 168 Protein_1724 IS5/IS1182 family transposase -
  A6J88_RS23420 (A6J88_09230) - 1865022..1865603 (-) 582 WP_080614108.1 hypothetical protein -
  A6J88_RS23425 (A6J88_09235) rluD 1865605..1866729 (-) 1125 WP_080614109.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A6J88_RS23430 (A6J88_09240) comL 1866728..1867534 (+) 807 WP_070773265.1 outer membrane protein assembly factor BamD Machinery gene
  A6J88_RS23435 (A6J88_09245) ilvA 1867646..1869172 (-) 1527 WP_080614110.1 threonine ammonia-lyase, biosynthetic -
  A6J88_RS23440 (A6J88_09250) - 1869388..1870641 (+) 1254 WP_080614111.1 D-alanyl-D-alanine carboxypeptidase family protein -
  A6J88_RS23445 (A6J88_09255) - 1870727..1871389 (+) 663 WP_080614112.1 YecA family protein -
  A6J88_RS23450 (A6J88_09260) - 1871462..1871950 (-) 489 WP_080614113.1 DUF456 domain-containing protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31209.24 Da        Isoelectric Point: 7.9863

>NTDB_id=223311 A6J88_RS23430 WP_070773265.1 1866728..1867534(+) (comL) [Neisseria mucosa strain FDAARGOS_260]
MKKILLVVSLSLALGACASNKGTVDKDAQITQDWNVEKLYAEAHDELNSSNYTRAIKLYEILESRFPNGRYAQQAQLDTA
YAYYKDDEPEKALAAIDRFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRSAYQAFAELVQRYPE
SKYAADATERMAKLVDALGGNEISVARYYMKRGAYLAAVNRAQKIVERYQNTRYVEEALAMMELAYKKLEKPQLAADTRR
VLETNFPQSPFLQHQWQPNDMPWWRYWR

Nucleotide


Download         Length: 807 bp        

>NTDB_id=223311 A6J88_RS23430 WP_070773265.1 1866728..1867534(+) (comL) [Neisseria mucosa strain FDAARGOS_260]
ATGAAAAAAATTCTTTTAGTAGTTTCGTTAAGTCTGGCACTCGGTGCCTGTGCAAGCAATAAAGGTACGGTCGATAAAGA
CGCGCAAATCACACAAGATTGGAACGTGGAAAAACTCTATGCCGAAGCGCATGACGAGTTGAACAGCAGCAATTATACGC
GAGCCATCAAGTTATACGAAATTTTAGAATCCCGCTTCCCCAACGGCCGCTACGCGCAACAGGCGCAACTGGATACCGCA
TACGCCTATTACAAAGACGACGAGCCTGAAAAAGCCCTCGCCGCCATCGACCGCTTCCAGCGCCATCACCCGCAACATCC
GAATATGGATTACGCGCTTTACCTCAAAGGCTTGGTTTTATTCAATGAAGACCAATCCTTCCTCAACAAACTCGCCTCGC
AAGACTGGTCCGACCGCGACCCTAAAGCCAACCGCAGCGCATACCAAGCATTTGCCGAATTGGTACAACGCTATCCGGAA
AGCAAATACGCCGCCGACGCAACCGAGCGCATGGCGAAACTGGTGGACGCATTGGGCGGTAACGAAATCTCCGTCGCCCG
CTACTACATGAAACGCGGCGCCTACCTCGCCGCTGTCAACCGCGCCCAAAAAATCGTCGAGCGTTACCAAAACACCCGCT
ACGTCGAAGAAGCCCTTGCCATGATGGAGCTGGCTTATAAGAAACTGGAAAAACCCCAACTCGCCGCCGACACCCGCCGC
GTCTTGGAAACCAACTTCCCGCAAAGCCCGTTCCTGCAACACCAATGGCAGCCAAACGACATGCCTTGGTGGCGCTACTG
GCGTTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

84.644

99.627

0.843
  comL Neisseria meningitidis MC58

84.644

99.627

0.843

Multiple sequence alignment