Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | A6J88_RS18960 | Genome accession | NZ_CP020452 |
| Coordinates | 971522..972076 (+) | Length | 184 a.a. |
| NCBI ID | WP_060974925.1 | Uniprot ID | - |
| Organism | Neisseria mucosa strain FDAARGOS_260 | ||
| Function | pseudopilus extrusion and retraction (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 970380..990848 | 971522..972076 | within | 0 |
Gene organization within MGE regions
Location: 970380..990848
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J88_RS18955 (A6J88_04885) | - | 970818..971504 (+) | 687 | WP_080613699.1 | type 4a pilus biogenesis protein PilO | - |
| A6J88_RS18960 (A6J88_04890) | pilP | 971522..972076 (+) | 555 | WP_060974925.1 | pilus assembly protein PilP | Machinery gene |
| A6J88_RS18965 (A6J88_04895) | pilQ | 972095..974230 (+) | 2136 | WP_080613700.1 | type IV pilus secretin PilQ | Machinery gene |
| A6J88_RS18970 (A6J88_04900) | - | 974397..975263 (+) | 867 | Protein_908 | IS630 family transposase | - |
| A6J88_RS18975 (A6J88_04905) | - | 975456..975872 (+) | 417 | WP_060974909.1 | DNA modification methylase | - |
| A6J88_RS18980 (A6J88_04910) | - | 975970..976578 (+) | 609 | Protein_910 | transposase | - |
| A6J88_RS28910 (A6J88_04915) | - | 976581..977353 (-) | 773 | Protein_911 | IS630 family transposase | - |
| A6J88_RS18995 (A6J88_04925) | - | 977369..978175 (-) | 807 | WP_080613701.1 | integrase core domain-containing protein | - |
| A6J88_RS19000 (A6J88_14000) | - | 978224..978313 (-) | 90 | Protein_913 | IS630 transposase-related protein | - |
| A6J88_RS19005 (A6J88_04930) | - | 978364..978765 (+) | 402 | Protein_914 | transposase | - |
| A6J88_RS19010 (A6J88_04935) | - | 979278..979814 (+) | 537 | WP_240594041.1 | shikimate kinase | - |
| A6J88_RS19015 (A6J88_04940) | aroB | 980015..981094 (+) | 1080 | WP_080613703.1 | 3-dehydroquinate synthase | - |
| A6J88_RS19020 (A6J88_04945) | argC | 981191..982234 (-) | 1044 | WP_070440277.1 | N-acetyl-gamma-glutamyl-phosphate reductase | - |
| A6J88_RS19025 (A6J88_04950) | - | 982518..983516 (-) | 999 | WP_070440279.1 | L,D-transpeptidase | - |
| A6J88_RS19030 (A6J88_04955) | rlmD | 983643..984989 (+) | 1347 | WP_240594043.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
| A6J88_RS19035 (A6J88_04960) | - | 985135..986586 (+) | 1452 | WP_039404568.1 | tetratricopeptide repeat protein | - |
| A6J88_RS19040 (A6J88_04965) | - | 986611..987702 (+) | 1092 | WP_039404565.1 | alpha-glucan phosphorylase | - |
| A6J88_RS19045 (A6J88_04970) | - | 987715..988251 (+) | 537 | WP_003743737.1 | GTP-binding protein | - |
| A6J88_RS19050 (A6J88_04975) | - | 988257..988898 (+) | 642 | WP_039404562.1 | hypothetical protein | - |
| A6J88_RS19055 (A6J88_04980) | - | 988938..989297 (+) | 360 | WP_003743735.1 | roadblock/LC7 domain-containing protein | - |
| A6J88_RS19065 (A6J88_04990) | prmC | 990021..990848 (+) | 828 | WP_080614483.1 | peptide chain release factor N(5)-glutamine methyltransferase | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20210.53 Da Isoelectric Point: 4.9305
>NTDB_id=223297 A6J88_RS18960 WP_060974925.1 971522..972076(+) (pilP) [Neisseria mucosa strain FDAARGOS_260]
MKNKIFLLTSILSLTGCTPAYDDLNEWMTKTRQDAKSHIIPFEAPVVNPPAVYNPPAYSGLNAFDFRRLDNAPKGSNAPN
PNRPKEALEAFSLENMRYVGMLSNGSKTVGFIDVNGHVYTVYPGNYIGQNYGKIQSITDDLIVLTELVEDSSGNWIYRKA
ELPLSNNAENSSNDASNASATNSN
MKNKIFLLTSILSLTGCTPAYDDLNEWMTKTRQDAKSHIIPFEAPVVNPPAVYNPPAYSGLNAFDFRRLDNAPKGSNAPN
PNRPKEALEAFSLENMRYVGMLSNGSKTVGFIDVNGHVYTVYPGNYIGQNYGKIQSITDDLIVLTELVEDSSGNWIYRKA
ELPLSNNAENSSNDASNASATNSN
Nucleotide
Download Length: 555 bp
>NTDB_id=223297 A6J88_RS18960 WP_060974925.1 971522..972076(+) (pilP) [Neisseria mucosa strain FDAARGOS_260]
ATGAAAAATAAAATTTTCTTACTTACAAGTATCCTGTCATTGACGGGGTGTACACCGGCATATGACGATTTGAATGAGTG
GATGACTAAGACACGTCAGGATGCTAAGTCTCATATCATTCCATTTGAGGCTCCGGTAGTGAACCCTCCGGCTGTTTATA
ATCCACCAGCTTACAGTGGTTTAAATGCATTCGATTTTCGACGGTTGGATAATGCACCTAAAGGTAGCAACGCTCCAAAT
CCCAATCGCCCAAAAGAAGCATTGGAAGCATTCAGTTTAGAAAATATGCGGTACGTAGGGATGCTGAGCAATGGCAGTAA
AACTGTCGGTTTTATTGATGTAAATGGACATGTCTATACAGTTTATCCGGGGAACTATATCGGACAAAATTATGGAAAAA
TCCAAAGCATTACTGATGATTTGATTGTTTTGACAGAGTTGGTTGAGGATAGTTCGGGCAATTGGATTTATCGAAAGGCG
GAATTGCCATTAAGCAATAATGCTGAAAATAGTTCAAATGATGCCAGTAATGCTTCAGCAACGAATTCAAACTAA
ATGAAAAATAAAATTTTCTTACTTACAAGTATCCTGTCATTGACGGGGTGTACACCGGCATATGACGATTTGAATGAGTG
GATGACTAAGACACGTCAGGATGCTAAGTCTCATATCATTCCATTTGAGGCTCCGGTAGTGAACCCTCCGGCTGTTTATA
ATCCACCAGCTTACAGTGGTTTAAATGCATTCGATTTTCGACGGTTGGATAATGCACCTAAAGGTAGCAACGCTCCAAAT
CCCAATCGCCCAAAAGAAGCATTGGAAGCATTCAGTTTAGAAAATATGCGGTACGTAGGGATGCTGAGCAATGGCAGTAA
AACTGTCGGTTTTATTGATGTAAATGGACATGTCTATACAGTTTATCCGGGGAACTATATCGGACAAAATTATGGAAAAA
TCCAAAGCATTACTGATGATTTGATTGTTTTGACAGAGTTGGTTGAGGATAGTTCGGGCAATTGGATTTATCGAAAGGCG
GAATTGCCATTAAGCAATAATGCTGAAAATAGTTCAAATGATGCCAGTAATGCTTCAGCAACGAATTCAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Neisseria meningitidis MC58 |
58.084 |
90.761 |
0.527 |