Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   A6J88_RS18555 Genome accession   NZ_CP020452
Coordinates   880249..880947 (-) Length   232 a.a.
NCBI ID   WP_080613672.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_260     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 875249..885947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J88_RS18530 (A6J88_04465) rpmE 875511..875726 (-) 216 WP_003741450.1 50S ribosomal protein L31 -
  A6J88_RS18535 (A6J88_04470) - 876009..876524 (+) 516 WP_049226649.1 acyltransferase -
  A6J88_RS18540 (A6J88_04475) cysS 876608..878029 (-) 1422 WP_080613669.1 cysteine--tRNA ligase -
  A6J88_RS18545 (A6J88_04480) - 878053..878832 (-) 780 WP_080613670.1 HNH endonuclease -
  A6J88_RS18550 (A6J88_04485) obgE 878900..880054 (-) 1155 WP_080613671.1 GTPase ObgE -
  A6J88_RS18555 (A6J88_04490) dsbA1 880249..880947 (-) 699 WP_080613672.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  A6J88_RS18565 (A6J88_04500) murJ 881147..882688 (+) 1542 WP_080613673.1 murein biosynthesis integral membrane protein MurJ -
  A6J88_RS18570 (A6J88_04505) - 882765..883769 (-) 1005 WP_019271190.1 quinone-dependent dihydroorotate dehydrogenase -
  A6J88_RS18575 (A6J88_04510) - 883922..884575 (+) 654 WP_176621473.1 HAD-IA family hydrolase -
  A6J88_RS18580 (A6J88_04515) - 884669..885505 (-) 837 WP_060975255.1 ATP-grasp domain-containing protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25257.99 Da        Isoelectric Point: 6.0254

>NTDB_id=223295 A6J88_RS18555 WP_080613672.1 880249..880947(-) (dsbA1) [Neisseria mucosa strain FDAARGOS_260]
MKLKALALTAALLALTACDSKVQTSVPADSAPAASAASAAPVALVEGLNYTTLSTPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHVKTFKDDTYLRTEHVVWGDEMKPLARLAAAVDMAVADTKDIANSHIFDAMVNQKVKLQDPETLKKWLAEQTA
FDGKKVLAAYESPESQTRADKMAELTNTYKIDGTPTVIVGGKYKVEFADWESGMKTIDLLADKVREEQKTAK

Nucleotide


Download         Length: 699 bp        

>NTDB_id=223295 A6J88_RS18555 WP_080613672.1 880249..880947(-) (dsbA1) [Neisseria mucosa strain FDAARGOS_260]
ATGAAACTGAAAGCCTTGGCTCTTACCGCCGCCCTGCTTGCCCTGACCGCCTGCGACAGCAAAGTCCAAACCAGCGTCCC
TGCCGACAGTGCGCCTGCGGCTTCAGCAGCCTCCGCTGCGCCTGTCGCTTTAGTTGAGGGGCTTAACTACACCACACTCA
GCACGCCTATTCCCCAACAGCAGGCAGGTAAAGTCGAAGTCCTCGAATTTTTCGGCTACTTCTGTCCGCACTGCGCCCAC
CTCGAACCCGTTTTGAGCAAACACGTCAAAACCTTCAAAGACGACACCTACCTTCGTACTGAACACGTTGTTTGGGGCGA
TGAGATGAAACCGTTGGCGCGCCTTGCTGCCGCCGTCGATATGGCGGTCGCAGACACCAAAGACATTGCAAACAGCCATA
TCTTTGATGCTATGGTTAATCAGAAAGTCAAACTGCAAGACCCTGAAACCCTCAAAAAATGGTTGGCCGAGCAAACCGCT
TTTGACGGCAAAAAAGTCCTCGCCGCCTACGAATCCCCCGAAAGCCAAACCCGCGCAGACAAAATGGCAGAGCTGACCAA
CACCTACAAAATTGACGGCACGCCTACCGTCATTGTCGGCGGCAAATACAAAGTCGAATTTGCCGATTGGGAATCAGGTA
TGAAAACCATAGACCTGCTTGCAGACAAAGTACGCGAAGAACAAAAAACTGCCAAATAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

83.691

100

0.841
  dsbA2 Neisseria meningitidis MC58

76.887

91.379

0.703

Multiple sequence alignment