Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RK51_RS16500 Genome accession   NZ_CP026041
Coordinates   3233827..3234555 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain FDAARGOS_51     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3228827..3239555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK51_RS16485 (RK51_016480) clpC 3229262..3231835 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  RK51_RS16490 (RK51_016485) pgeF 3231983..3232711 (-) 729 WP_005497226.1 peptidoglycan editing factor PgeF -
  RK51_RS16495 (RK51_016490) rluD 3232713..3233690 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RK51_RS16500 (RK51_016495) comL 3233827..3234555 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  RK51_RS16505 (RK51_016500) - 3234690..3236171 (+) 1482 WP_021447381.1 lytic transglycosylase F -
  RK51_RS16510 (RK51_016505) hpf 3236502..3236828 (+) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RK51_RS16515 (RK51_016510) pheA 3237072..3238250 (+) 1179 WP_005468591.1 prephenate dehydratase -
  RK51_RS16520 (RK51_016515) yjjX 3238275..3238808 (+) 534 WP_005497220.1 inosine/xanthosine triphosphatase -
  RK51_RS16525 (RK51_016520) trpR 3238857..3239168 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=223129 RK51_RS16500 WP_005460312.1 3233827..3234555(+) (comL) [Vibrio parahaemolyticus strain FDAARGOS_51]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=223129 RK51_RS16500 WP_005460312.1 3233827..3234555(+) (comL) [Vibrio parahaemolyticus strain FDAARGOS_51]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ATCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCAGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCTGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCACTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405