Detailed information
Bioinformatically predicted
Overview
| Name | oppD | Type | Regulator |
| Locus tag | A6J82_RS01055 | Genome accession | NZ_CP020449 |
| Coordinates | 185231..186277 (-) | Length | 348 a.a. |
| NCBI ID | WP_000410284.1 | Uniprot ID | - |
| Organism | Streptococcus agalactiae strain FDAARGOS_254 | ||
| Function | internalize XIP (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 160849..208978 | 185231..186277 | within | 0 |
Gene organization within MGE regions
Location: 160849..208978
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J82_RS00900 (A6J82_00915) | - | 160849..161229 (-) | 381 | WP_041326065.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| A6J82_RS00905 (A6J82_00920) | - | 161266..161457 (-) | 192 | WP_003038349.1 | type II toxin-antitoxin system HicA family toxin | - |
| A6J82_RS00915 (A6J82_00930) | - | 162236..162571 (-) | 336 | WP_041326062.1 | hypothetical protein | - |
| A6J82_RS00920 (A6J82_00935) | - | 162571..163149 (-) | 579 | WP_024053142.1 | hypothetical protein | - |
| A6J82_RS00925 (A6J82_00940) | - | 163197..163640 (-) | 444 | WP_024053143.1 | DUF1492 domain-containing protein | - |
| A6J82_RS00930 (A6J82_00945) | - | 163800..164222 (-) | 423 | WP_225791875.1 | hypothetical protein | - |
| A6J82_RS00935 (A6J82_00950) | - | 165080..166528 (-) | 1449 | WP_041326850.1 | phage/plasmid primase, P4 family | - |
| A6J82_RS00940 (A6J82_00955) | - | 166611..167468 (-) | 858 | WP_041326060.1 | primase alpha helix C-terminal domain-containing protein | - |
| A6J82_RS11525 | - | 167470..167616 (-) | 147 | WP_181970976.1 | hypothetical protein | - |
| A6J82_RS00945 (A6J82_00960) | - | 167603..167767 (-) | 165 | WP_041326058.1 | hypothetical protein | - |
| A6J82_RS00950 (A6J82_00965) | - | 167764..168036 (-) | 273 | WP_041326056.1 | hypothetical protein | - |
| A6J82_RS00955 (A6J82_00970) | - | 168039..168389 (-) | 351 | WP_024053150.1 | HTH domain-containing protein | - |
| A6J82_RS00960 (A6J82_00975) | - | 168386..168622 (-) | 237 | WP_041326054.1 | hypothetical protein | - |
| A6J82_RS11530 | - | 168612..168788 (-) | 177 | WP_174721377.1 | hypothetical protein | - |
| A6J82_RS00965 (A6J82_00980) | - | 168785..169312 (-) | 528 | WP_024053152.1 | hypothetical protein | - |
| A6J82_RS00970 (A6J82_00985) | - | 169760..170392 (-) | 633 | WP_024053153.1 | Rha family transcriptional regulator | - |
| A6J82_RS00975 (A6J82_00990) | - | 170383..171129 (-) | 747 | WP_041326052.1 | BRO family protein | - |
| A6J82_RS00980 (A6J82_00995) | - | 171146..171553 (-) | 408 | WP_024053155.1 | hypothetical protein | - |
| A6J82_RS00985 (A6J82_01000) | - | 171568..171771 (-) | 204 | WP_003066809.1 | helix-turn-helix transcriptional regulator | - |
| A6J82_RS00990 (A6J82_11490) | - | 171994..172584 (+) | 591 | WP_052471775.1 | helix-turn-helix domain-containing protein | - |
| A6J82_RS00995 (A6J82_01015) | - | 172778..173923 (+) | 1146 | WP_041326046.1 | site-specific integrase | - |
| A6J82_RS01000 (A6J82_01020) | - | 174622..175653 (+) | 1032 | WP_000777421.1 | DNA/RNA non-specific endonuclease | - |
| A6J82_RS01005 (A6J82_01025) | - | 175864..176676 (-) | 813 | WP_000923270.1 | metal ABC transporter permease | - |
| A6J82_RS01010 (A6J82_01030) | - | 176666..177376 (-) | 711 | WP_001269501.1 | metal ABC transporter ATP-binding protein | - |
| A6J82_RS01015 (A6J82_01035) | - | 177379..177822 (-) | 444 | WP_000217076.1 | zinc-dependent MarR family transcriptional regulator | - |
| A6J82_RS01020 (A6J82_01040) | ispE | 177908..178759 (-) | 852 | WP_000688172.1 | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase | - |
| A6J82_RS01050 (A6J82_01070) | amiF | 184299..185231 (-) | 933 | WP_000138506.1 | ABC transporter ATP-binding protein | Regulator |
| A6J82_RS01055 (A6J82_01075) | oppD | 185231..186277 (-) | 1047 | WP_000410284.1 | ABC transporter ATP-binding protein | Regulator |
| A6J82_RS01060 (A6J82_01080) | - | 186290..187321 (-) | 1032 | WP_000764050.1 | ABC transporter permease | - |
| A6J82_RS01065 (A6J82_01085) | - | 187331..188245 (-) | 915 | WP_000598965.1 | ABC transporter permease | - |
| A6J82_RS01070 (A6J82_01090) | - | 188363..190018 (-) | 1656 | WP_001118759.1 | peptide ABC transporter substrate-binding protein | - |
| A6J82_RS01075 (A6J82_01095) | pbp3 | 190259..191494 (+) | 1236 | WP_000720940.1 | D-alanyl-D-alanine carboxypeptidase PBP3 | - |
| A6J82_RS01080 (A6J82_01100) | - | 191647..192834 (+) | 1188 | WP_001125234.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
| A6J82_RS01085 (A6J82_01105) | sufB | 192906..194324 (-) | 1419 | WP_001289834.1 | Fe-S cluster assembly protein SufB | - |
| A6J82_RS01090 (A6J82_01110) | sufU | 194424..194867 (-) | 444 | WP_001218456.1 | Fe-S cluster assembly sulfur transfer protein SufU | - |
| A6J82_RS01095 (A6J82_01115) | - | 194854..196086 (-) | 1233 | WP_000173345.1 | cysteine desulfurase | - |
| A6J82_RS01100 (A6J82_01120) | sufD | 196088..197350 (-) | 1263 | WP_000031277.1 | Fe-S cluster assembly protein SufD | - |
| A6J82_RS01105 (A6J82_01125) | sufC | 197387..198157 (-) | 771 | WP_000114502.1 | Fe-S cluster assembly ATPase SufC | - |
| A6J82_RS01110 (A6J82_01130) | - | 198422..199834 (+) | 1413 | WP_017771557.1 | IS1182 family transposase | - |
| A6J82_RS01115 (A6J82_01135) | ltrA | 199884..201161 (-) | 1278 | WP_094248899.1 | group II intron reverse transcriptase/maturase | - |
| A6J82_RS01120 (A6J82_01140) | - | 201737..202897 (-) | 1161 | WP_000612112.1 | glycosyltransferase family 4 protein | - |
| A6J82_RS01125 (A6J82_01145) | mecA | 202899..203654 (-) | 756 | WP_000425371.1 | adaptor protein MecA | Regulator |
| A6J82_RS01130 (A6J82_01150) | - | 203774..204613 (-) | 840 | WP_000905327.1 | undecaprenyl-diphosphate phosphatase | - |
| A6J82_RS01135 (A6J82_01155) | - | 204659..206542 (-) | 1884 | WP_000710505.1 | DUF2207 domain-containing protein | - |
| A6J82_RS01140 (A6J82_01160) | - | 206678..208228 (+) | 1551 | WP_000722378.1 | ABC transporter substrate-binding protein/permease | - |
| A6J82_RS01145 (A6J82_01165) | - | 208238..208978 (+) | 741 | WP_000189495.1 | amino acid ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 38745.21 Da Isoelectric Point: 4.7128
>NTDB_id=223100 A6J82_RS01055 WP_000410284.1 185231..186277(-) (oppD) [Streptococcus agalactiae strain FDAARGOS_254]
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGDVQFKGRNLVEL
SEEEWTKVRGNEISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTDTESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQKRWEKWNEIEGRKA
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGDVQFKGRNLVEL
SEEEWTKVRGNEISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTDTESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQKRWEKWNEIEGRKA
Nucleotide
Download Length: 1047 bp
>NTDB_id=223100 A6J82_RS01055 WP_000410284.1 185231..186277(-) (oppD) [Streptococcus agalactiae strain FDAARGOS_254]
ATGGAAAAAGAAACTATTTTAAGTGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCAATTCG
TGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCAGGGGATGTTCAATTTAAGGGGCGTAACCTTGTTGAACTA
TCAGAAGAAGAGTGGACTAAGGTACGTGGAAATGAGATTTCGATGATTTTCCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGCATGCAAATAGCGGAGCCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TTGAGCTAATGAAAGATGTAGGTATCCCAAATGCTGAAGAGCATATTAACGATTACCCACATCAGTGGTCTGGAGGAATG
CGTCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATTCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTGAACTTAATGAAAAAAATTCAAGCAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGGGTCGTTGCAGGGATGGCAGACCGTGTAGCAGTTATGTATGCAGGGAAAATCGTTGAATTTGGAACTGTT
GATGAAGTCTTTTATAATCCACAACATCCATATACTTGGGGATTATTGAATTCAATGCCGACAACCGACACAGAATCAGG
TAGTTTAGAGTCAATTCCGGGAACACCACCAGATTTGTTGAACCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATCCAAAAACGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCTAA
ATGGAAAAAGAAACTATTTTAAGTGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCAATTCG
TGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCAGGGGATGTTCAATTTAAGGGGCGTAACCTTGTTGAACTA
TCAGAAGAAGAGTGGACTAAGGTACGTGGAAATGAGATTTCGATGATTTTCCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGCATGCAAATAGCGGAGCCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TTGAGCTAATGAAAGATGTAGGTATCCCAAATGCTGAAGAGCATATTAACGATTACCCACATCAGTGGTCTGGAGGAATG
CGTCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATTCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTGAACTTAATGAAAAAAATTCAAGCAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGGGTCGTTGCAGGGATGGCAGACCGTGTAGCAGTTATGTATGCAGGGAAAATCGTTGAATTTGGAACTGTT
GATGAAGTCTTTTATAATCCACAACATCCATATACTTGGGGATTATTGAATTCAATGCCGACAACCGACACAGAATCAGG
TAGTTTAGAGTCAATTCCGGGAACACCACCAGATTTGTTGAACCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATCCAAAAACGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| oppD | Streptococcus mutans UA159 |
79.251 |
99.713 |
0.79 |
| amiE | Streptococcus salivarius strain HSISS4 |
55.162 |
97.414 |
0.537 |
| amiE | Streptococcus thermophilus LMG 18311 |
54.572 |
97.414 |
0.532 |
| amiE | Streptococcus thermophilus LMD-9 |
54.572 |
97.414 |
0.532 |