Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   A6J72_RS07655 Genome accession   NZ_CP020433
Coordinates   1525435..1527201 (+) Length   588 a.a.
NCBI ID   WP_082312141.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1520435..1532201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS07635 (A6J72_07625) scrK 1521983..1522882 (+) 900 WP_003074417.1 fructokinase ScrK -
  A6J72_RS07640 (A6J72_07630) - 1522948..1523358 (+) 411 WP_009569319.1 peptide deformylase -
  A6J72_RS07645 (A6J72_07635) - 1523625..1524812 (+) 1188 WP_009569318.1 NADH-dependent flavin oxidoreductase -
  A6J72_RS07650 (A6J72_07640) - 1524984..1525442 (+) 459 WP_082312140.1 MarR family winged helix-turn-helix transcriptional regulator -
  A6J72_RS07655 (A6J72_07645) rcrP 1525435..1527201 (+) 1767 WP_082312141.1 ABC transporter ATP-binding protein Regulator
  A6J72_RS07660 (A6J72_07650) rcrQ 1527191..1528951 (+) 1761 WP_105255943.1 ABC transporter ATP-binding protein Regulator
  A6J72_RS07665 (A6J72_07655) - 1529036..1529449 (+) 414 WP_003075980.1 cupin domain-containing protein -
  A6J72_RS07670 (A6J72_07660) - 1529598..1530995 (-) 1398 WP_082312142.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65251.99 Da        Isoelectric Point: 6.6711

>NTDB_id=223026 A6J72_RS07655 WP_082312141.1 1525435..1527201(+) (rcrP) [Streptococcus intermedius strain FDAARGOS_233]
MVKLFKRLTVKEVGMIIISILFTCLAVYLDLEVPTYISKITELLQTKGTVVSDLWNPGLKMIGLSFASFLSAVVVGFIAA
RLAASFTTSLRSDIFNRVLDYSNAEIKRFSIPSLLTRTTNDLTQIQLMITMGLQVVTRGPIMAIWAITKIIGKSEYWLWA
VIVAVIVNMIMTTVLMTLAFPKQSVIQRLTDKLNSITRESLTGIRVVRAYNAEDYQDDKFAGANDEVTRLNLFVNRLMAI
LNPIMMGISSGLTLAIYWIGAYLIQDAALSERLPIFSDMVVFMSYAMQVVMGFMLMAALFIVLPRTLVSAGRINEVLDLH
STIESPMQATTAKDIKGEVVFDNVSFRYTKNSEAVIEHVSFTAKAGETVAFIGSTGSGKSTLISLIPRFYDVTEGRILVD
GVNVKDYQLEDLHNKIGYIPQKAVLFSGDIKSNLDFGQSNESPLDDEKMWSALDLAQAKSFVEEKEGGLHSEVAQSGTNF
SGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILREELAKKVKATTRLIVAQRISTIMDADQILVLDKGKVVGQGT
HKELLATNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=223026 A6J72_RS07655 WP_082312141.1 1525435..1527201(+) (rcrP) [Streptococcus intermedius strain FDAARGOS_233]
ATGGTTAAATTGTTTAAACGTTTAACTGTTAAAGAAGTAGGGATGATTATCATCAGTATCTTGTTTACTTGTTTGGCAGT
TTACTTGGACTTAGAGGTTCCAACCTATATTTCAAAAATTACGGAACTCCTACAGACGAAAGGAACGGTCGTTTCTGATT
TGTGGAATCCGGGCTTGAAAATGATTGGATTGTCATTTGCTAGTTTTCTCAGTGCTGTGGTAGTTGGTTTTATTGCGGCT
AGATTGGCAGCTAGCTTTACAACGAGCTTGCGCTCAGATATTTTCAATCGTGTACTGGATTATTCAAATGCTGAGATTAA
GAGATTTTCTATTCCAAGTCTTTTAACGCGGACAACCAATGATCTTACGCAAATTCAGCTTATGATTACTATGGGCTTGC
AAGTCGTGACTCGTGGGCCGATTATGGCGATTTGGGCGATTACAAAAATCATTGGGAAATCAGAATACTGGCTGTGGGCA
GTTATTGTCGCAGTTATTGTGAATATGATTATGACGACAGTTTTGATGACGTTGGCCTTTCCAAAGCAATCTGTTATTCA
ACGGTTGACTGATAAGTTAAATAGTATTACGCGTGAAAGTCTAACAGGGATTCGTGTTGTTCGAGCTTACAATGCTGAAG
ACTATCAAGATGATAAATTTGCAGGGGCAAATGATGAAGTGACTCGGTTGAATCTCTTTGTTAATCGGCTTATGGCGATT
TTAAATCCGATTATGATGGGGATTTCGAGTGGTTTGACCTTGGCAATATACTGGATTGGTGCTTACTTGATTCAAGATGC
AGCTTTATCAGAACGCTTGCCAATCTTTAGCGACATGGTTGTCTTTATGTCCTATGCTATGCAGGTCGTAATGGGCTTCA
TGCTCATGGCTGCTCTGTTTATCGTTCTTCCTCGTACCTTGGTGTCTGCGGGGCGTATTAATGAGGTACTTGATTTGCAT
TCAACGATTGAATCTCCAATGCAAGCAACAACAGCTAAAGATATCAAAGGTGAAGTGGTATTTGACAATGTTTCTTTCCG
CTATACTAAAAACTCTGAGGCAGTCATTGAACATGTTAGCTTTACGGCTAAAGCGGGCGAAACGGTAGCTTTCATCGGAT
CAACTGGTTCTGGGAAATCAACCCTAATTAGTTTAATTCCTCGTTTCTATGATGTGACAGAAGGAAGAATTTTAGTAGAT
GGCGTGAATGTAAAAGATTATCAGTTGGAAGATTTGCATAATAAAATTGGCTACATTCCACAAAAAGCTGTTCTCTTTTC
TGGTGATATAAAGAGTAATTTAGACTTTGGACAAAGCAATGAAAGTCCGTTGGATGATGAAAAAATGTGGTCTGCGTTGG
ACTTGGCACAAGCGAAATCATTTGTTGAAGAAAAAGAAGGTGGTCTGCACTCAGAGGTTGCACAAAGCGGAACCAATTTC
TCTGGTGGTCAAAAGCAGCGGCTGGCGATTGCGCGTGCACTTGCTAGGAAACCTGAAATTCTGATTTTTGACGATTCATT
TTCAGCACTGGACTATAAGACAGACCGTATTTTGCGAGAAGAATTGGCGAAAAAAGTGAAAGCTACAACCAGATTGATTG
TAGCTCAGCGGATTTCAACGATCATGGATGCTGATCAGATCTTGGTGTTGGATAAAGGGAAGGTTGTTGGGCAAGGGACT
CACAAAGAGCTGCTAGCGACCAACGAAGTTTATCAAGAAATTGCTTACTCACAATTATCAAAGGAGGAATTGGAAAATGG
AAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-506)

ABC transporter transmembrane region (ABC_membrane)

(16-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

70.5

100

0.719

Multiple sequence alignment