Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C2H97_RS14235 Genome accession   NZ_CP026038
Coordinates   2719154..2719801 (+) Length   215 a.a.
NCBI ID   WP_085186395.1    Uniprot ID   -
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2714154..2724801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS14220 (C2H97_14260) glpD 2714325..2715992 (+) 1668 WP_021479678.1 glycerol-3-phosphate dehydrogenase -
  C2H97_RS14225 (C2H97_14265) pgcA 2716124..2717869 (+) 1746 WP_249848305.1 phosphoglucomutase -
  C2H97_RS14230 (C2H97_14270) yhcY 2718018..2719157 (+) 1140 WP_021479676.1 two-component system sensor histidine kinase YhcY -
  C2H97_RS14235 (C2H97_14275) vraR 2719154..2719801 (+) 648 WP_085186395.1 two-component system response regulator YhcZ Regulator
  C2H97_RS14240 (C2H97_14280) yhdA 2719798..2720322 (+) 525 WP_021479674.1 FMN-dependent NADPH-azoreductase -
  C2H97_RS14245 (C2H97_14285) yhdB 2720337..2720579 (-) 243 WP_003233373.1 YhdB family protein -
  C2H97_RS14250 (C2H97_14290) yhdC 2720780..2721103 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  C2H97_RS14255 (C2H97_14295) lytF 2721145..2722611 (-) 1467 WP_120027930.1 peptidoglycan endopeptidase LytF -
  C2H97_RS14260 (C2H97_14300) nsrR 2722765..2723205 (-) 441 WP_014476271.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24175.86 Da        Isoelectric Point: 6.3034

>NTDB_id=222835 C2H97_RS14235 WP_085186395.1 2719154..2719801(+) (vraR) [Bacillus subtilis PY79 strain PK1_3]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEILK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=222835 C2H97_RS14235 WP_085186395.1 2719154..2719801(+) (vraR) [Bacillus subtilis PY79 strain PK1_3]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACTGGATTAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
TAAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.395

Multiple sequence alignment