Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C2H97_RS04770 Genome accession   NZ_CP026038
Coordinates   880983..881618 (-) Length   211 a.a.
NCBI ID   WP_021480575.1    Uniprot ID   -
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 875983..886618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS04750 (C2H97_04755) yvzF 877040..877225 (-) 186 WP_003244599.1 YvzF family protein -
  C2H97_RS04755 (C2H97_04760) gerAA 877343..878791 (+) 1449 WP_014477941.1 spore germination receptor protein GerAA -
  C2H97_RS04760 (C2H97_04765) gerAB 878760..879857 (+) 1098 WP_021480573.1 spore germination receptor protein GerAB -
  C2H97_RS04765 (C2H97_04770) gerAC 879854..880975 (+) 1122 WP_021480574.1 spore germination receptor protein GerAC -
  C2H97_RS04770 (C2H97_04775) vraR 880983..881618 (-) 636 WP_021480575.1 two-component system response regulator LiaR Regulator
  C2H97_RS04775 (C2H97_04780) liaS 881596..882678 (-) 1083 WP_249847996.1 two-component system sensor histidine kinase LiaS -
  C2H97_RS04780 (C2H97_04785) liaF 882675..883400 (-) 726 WP_003228510.1 LiaRS two-component regulatory system accessory protein LiaF -
  C2H97_RS04785 (C2H97_04790) liaG 883434..884306 (-) 873 WP_120028557.1 DUF4097 domain-containing protein -
  C2H97_RS04790 (C2H97_04795) liaH 884407..885084 (-) 678 WP_249847994.1 stress responsive protein LiaH -
  C2H97_RS04795 (C2H97_04800) liaI 885111..885491 (-) 381 WP_003243447.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23110.77 Da        Isoelectric Point: 5.0313

>NTDB_id=222777 C2H97_RS04770 WP_021480575.1 880983..881618(-) (vraR) [Bacillus subtilis PY79 strain PK1_3]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIEATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=222777 C2H97_RS04770 WP_021480575.1 880983..881618(-) (vraR) [Bacillus subtilis PY79 strain PK1_3]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCGGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGCCGGGAGCTTTCCGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTGACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCGCATCGAAATCATCTCGTCAAATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.393

100

0.408