Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6J51_RS07365 Genome accession   NZ_CP020423
Coordinates   1245900..1246364 (+) Length   154 a.a.
NCBI ID   WP_014580830.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_212     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1240900..1251364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J51_RS07365 (A6J51_07100) comE 1245900..1246364 (+) 465 WP_014580830.1 helix-hairpin-helix domain-containing protein Machinery gene
  A6J51_RS07370 (A6J51_07105) - 1246478..1246915 (-) 438 Protein_1185 HK97 family phage prohead protease -
  A6J51_RS07375 (A6J51_07110) - 1247027..1247620 (-) 594 WP_002226163.1 hypothetical protein -
  A6J51_RS07380 (A6J51_07115) prmB 1247765..1248664 (+) 900 WP_002235090.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  A6J51_RS07390 (A6J51_07125) - 1248945..1249682 (+) 738 WP_002220248.1 toxin-antitoxin system YwqK family antitoxin -
  A6J51_RS07395 (A6J51_07130) - 1249808..1250080 (+) 273 WP_002212673.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16519.75 Da        Isoelectric Point: 10.9695

>NTDB_id=222773 A6J51_RS07365 WP_014580830.1 1245900..1246364(+) (comE) [Neisseria meningitidis strain FDAARGOS_212]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=222773 A6J51_RS07365 WP_014580830.1 1245900..1246364(+) (comE) [Neisseria meningitidis strain FDAARGOS_212]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment