Detailed information NTG0222767

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: A6J51_RS05855
• Genome accession: NZ_CP020423
• Coordinates: 983731..984591 (-)
• Length: 286 a.a.
• NCBI ID: WP_002220276.1
• Uniprot ID: -
• Organism: Neisseria meningitidis strain FDAARGOS_212
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 978731..989591

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6J51_RS05815 (A6J51_05610)	ispB	979218..980192 (+)	975	WP_002216396.1	octaprenyl diphosphate synthase	-
A6J51_RS05820 (A6J51_05615)	-	980196..980642 (+)	447	WP_014581766.1	DUF441 domain-containing protein	-
A6J51_RS05840 (A6J51_05625)	pilF	981134..982810 (+)	1677	WP_002221967.1	type IV-A pilus assembly ATPase PilB	Machinery gene
A6J51_RS05845 (A6J51_05630)	-	982895..983104 (-)	210	WP_002226982.1	DNA gyrase inhibitor YacG	-
A6J51_RS05850 (A6J51_05635)	coaE	983097..983729 (-)	633	WP_080611113.1	dephospho-CoA kinase	-
A6J51_RS05855 (A6J51_05640)	pilD	983731..984591 (-)	861	WP_002220276.1	A24 family peptidase	Machinery gene
A6J51_RS05860 (A6J51_05645)	pilG	984665..985897 (-)	1233	WP_002216405.1	type 4 pilus assembly protein PilG	Machinery gene
A6J51_RS05870 (A6J51_05650)	pgi	986407..988050 (+)	1644	WP_080611115.1	glucose-6-phosphate isomerase	-
A6J51_RS05875 (A6J51_05655)	-	988020..988250 (+)	231	WP_002212338.1	hypothetical protein	-
A6J51_RS05880 (A6J51_05660)	dapD	988260..989081 (+)	822	WP_002212339.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31359.40 Da
• Isoelectric Point: 8.2213

>NTDB_id=222767 A6J51_RS05855 WP_002220276.1 983731..984591(-) (pilD) [Neisseria meningitidis strain FDAARGOS_212]
MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVFAKEYLNLPLTEEESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLIKGEIGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVL

Nucleotide

• Length: 861 bp

>NTDB_id=222767 A6J51_RS05855 WP_002220276.1 983731..984591(-) (pilD) [Neisseria meningitidis strain FDAARGOS_212]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCGGTGTTCGGGCTGCTGGTCGGCAGTTTCTTAAA
CGTCGTCATTTACCGCGTGCCGGTCATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAATATTTAAACCTGCCGCTGA
CCGAAGAGGAAAGCCGTACCTTCAACCTGATGAAACCGGATTCCTGCTGTCCCAAATGCCGCGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGCTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGCTATCC
CTTAATCGAACTGCTGACCGGCGTATTGTTCGGGCTGGTTGCCTGGCAATACGGCTGGTCTTGGATTACATTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATTTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATGGTTCGATATGGCTTTTATGCGCGGTATATAAACTGATTAAAGGCGAAATCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCGCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCAGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	96.14	99.65	0.958
pilD	Vibrio cholerae strain A1552	44.444	100	0.448
pilD	Vibrio campbellii strain DS40M4	44.928	96.503	0.434
pilD	Acinetobacter baumannii D1279779	46.97	92.308	0.434
pilD	Acinetobacter nosocomialis M2	46.97	92.308	0.434