Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6J51_RS05655 Genome accession   NZ_CP020423
Coordinates   956675..957139 (+) Length   154 a.a.
NCBI ID   WP_192941134.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_212     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 957829..958482 956675..957139 flank 690


Gene organization within MGE regions


Location: 956675..958482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J51_RS05655 (A6J51_05450) comE 956675..957139 (+) 465 WP_192941134.1 helix-hairpin-helix domain-containing protein Machinery gene
  A6J51_RS14380 - 957251..957709 (+) 459 WP_002234522.1 hypothetical protein -
  A6J51_RS05670 (A6J51_05460) - 957829..958482 (+) 654 WP_002235427.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16499.77 Da        Isoelectric Point: 10.7894

>NTDB_id=222765 A6J51_RS05655 WP_192941134.1 956675..957139(+) (comE) [Neisseria meningitidis strain FDAARGOS_212]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=222765 A6J51_RS05655 WP_192941134.1 956675..957139(+) (comE) [Neisseria meningitidis strain FDAARGOS_212]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGCGCACCCGCACCAAAAGCCCCAGCCAAACCGGTGCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment