Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   A6J51_RS01790 Genome accession   NZ_CP020423
Coordinates   307890..310988 (+) Length   1032 a.a.
NCBI ID   WP_080610917.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_212     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302890..315988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J51_RS01750 (A6J51_01685) hpaC 303585..304085 (-) 501 WP_002233027.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -
  A6J51_RS01755 (A6J51_01690) nadR 304200..304640 (-) 441 WP_002221507.1 MarR family adhesin repressor NadR -
  A6J51_RS01765 (A6J51_01700) - 304983..305492 (-) 510 WP_002246419.1 protein disulfide oxidoreductase -
  A6J51_RS01775 (A6J51_01710) apbC 305857..306936 (+) 1080 WP_002257677.1 iron-sulfur cluster carrier protein ApbC -
  A6J51_RS01790 (A6J51_01730) pilC 307890..310988 (+) 3099 WP_080610917.1 PilC family type IV pilus tip adhesin Machinery gene
  A6J51_RS14035 - 312955..313296 (+) 342 WP_153320936.1 hypothetical protein -
  A6J51_RS01820 (A6J51_01770) carA 313482..314615 (+) 1134 WP_002217954.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  A6J51_RS01825 (A6J51_01775) - 314661..314798 (+) 138 WP_002214606.1 VOC family protein -
  A6J51_RS01835 (A6J51_01790) - 315359..315748 (+) 390 WP_002219820.1 endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 1032 a.a.        Molecular weight: 112981.06 Da        Isoelectric Point: 9.7434

>NTDB_id=222752 A6J51_RS01790 WP_080610917.1 307890..310988(+) (pilC) [Neisseria meningitidis strain FDAARGOS_212]
MNKTLKRRVFRHTALYAAILMFSHTGGGAMAQTHKYAIIMNERNQPEVKSNVPYSIKDKDRKRVFDYTSQKNSFGGTNNF
ISFNNSDELVSRQSGTAVFGTATHLPPYGKVSGFDADGLKKRNNAVDWIRTTRIALAGYSYKDVVCRSGTGCPKLVYKTR
FSFDNPDLAKTGGGLDRHTEPSRDNSPIYKLKDHPWLGVSFNLGSANTVQIGKSFNKLISSFSEDNNNQTIVSTTEGYPI
SLGDGQREHTAVAYYLNAKLHLLDKKQIQNITDKTVQLGVLKPSIDVKTQNTGLSGILSFWAKWDIKDTGQIPVKLSLPE
VKAGRCINKPNPNPNAKALSPALTAPALWFGAGQDGKAEMYSASVSTYPDSSSSRIFLQNLKRKTDHSKPGRHSLATLTE
NDIKSREPTFTSRQTIIRLDKGVHQIKLQGNEVANFNGNDGKNDTFGIVSEGSFTPDVSEWKKVLLPWTVRDSADDSKFK
AFNKEENNDNKPKYSQKYRSRENGNNSKRDLGDIVNSPIVAVGGYLATSANDGMVHIFKKGNGDARNYSLKLSYIPGTMP
RKDIESKESTLAKELRAFAEKSYVGDRYGVDGGFVLREVERDGKTRVFMFGAMGFGGRGAYALDLTKADGSDPTAVSLFD
VKNDNNSVQLGYTVGTPQIGKTHNGKYAAFLASGYATKDINNGENKTALYVYDLENNNGTPIAKIEVKDGKGGLSSPTLV
DKDLDGTVDIAYAGDRGGSMYRFDLSNQDPSQWTVRTIFQGTKPITSAPAISQLKDKRVVIFGTGSDLSEEDVDKKDEQY
IYGIFDDDTAASNVDVKLKGLGGGLLEQVLEQKDKTLFLTDYKRSDGSGSKGWVVKLKDGQRVTVKPTVVLRTAFVTIRK
YTDNGCGAETAILGINTADGGKLTKKSARPIVPDANKDVAQYSGHKKGINGKSIPIGCMQKGNEIVCPNGYVYDKPVNVR
YLDEKKTDGFSTTADGDAGGSGIDPDGKRAGKNNRCFSQKGVRTLLMNDLDSLDIAGPTCGMKRISWREIFY

Nucleotide


Download         Length: 3099 bp        

>NTDB_id=222752 A6J51_RS01790 WP_080610917.1 307890..310988(+) (pilC) [Neisseria meningitidis strain FDAARGOS_212]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGCGATGGCGCAAACCCATAAATACGCTATTATCATGAACGAGCGAAACCAGCCCGAGGTAAAGTCGAATGTGCCAT
ATTCAATAAAGGACAAAGACAGGAAGCGGGTATTTGACTATACGAGCCAGAAAAACAGCTTCGGCGGGACAAACAATTTT
ATCTCATTCAACAATAGCGATGAGCTTGTTTCTCGACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCCACCTGCCGCC
CTACGGCAAGGTTTCCGGTTTTGATGCCGACGGGCTGAAAAAGCGCAACAATGCCGTTGATTGGATTCGTACCACCCGCA
TCGCGCTGGCAGGCTACAGCTACAAAGATGTCGTATGCAGAAGCGGCACAGGCTGTCCCAAACTTGTCTATAAAACCCGA
TTTTCCTTCGATAATCCCGACTTGGCAAAAACAGGAGGCGGGCTGGATAGGCACACAGAGCCAAGCCGCGACAATTCGCC
CATTTACAAATTGAAAGATCATCCATGGTTGGGCGTATCTTTCAATTTGGGCAGCGCGAATACCGTCCAAATTGGCAAAT
CATTCAACAAATTGATATCTTCTTTTAGTGAAGACAATAATAATCAAACCATCGTCTCTACGACAGAAGGCTACCCTATT
TCCCTTGGCGACGGGCAGCGCGAACATACCGCCGTGGCCTATTATCTGAACGCCAAGCTGCACCTGCTGGATAAAAAACA
GATTCAAAATATCACCGACAAAACAGTGCAGTTGGGTGTCTTGAAGCCGAGCATCGATGTGAAGACACAAAATACGGGGC
TTAGCGGCATTCTATCTTTTTGGGCTAAGTGGGACATTAAAGATACCGGGCAGATTCCAGTCAAACTCAGCCTGCCGGAA
GTCAAAGCAGGCCGCTGCATCAATAAACCGAACCCCAATCCCAACGCTAAAGCCCTTTCCCCCGCACTGACCGCCCCCGC
GCTGTGGTTCGGAGCTGGGCAAGATGGTAAGGCGGAGATGTATTCCGCTTCGGTTTCCACCTACCCCGACAGTTCGAGCA
GCCGCATCTTCCTTCAAAATCTGAAAAGAAAAACCGACCACAGCAAACCCGGCCGCCATTCCCTCGCAACCTTGACTGAG
AATGATATTAAAAGTCGAGAGCCGACTTTCACAAGTCGGCAAACAATCATCCGATTGGATAAAGGCGTACATCAGATCAA
ACTTCAAGGCAATGAGGTCGCCAATTTTAATGGAAATGACGGCAAAAACGACACTTTCGGCATTGTTAGTGAAGGGAGCT
TCACGCCTGATGTCAGCGAGTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCGGGATTCTGCTGATGACAGTAAATTTAAA
GCATTCAACAAAGAAGAAAACAACGACAACAAGCCAAAATACAGCCAAAAATACCGCAGCCGCGAAAACGGCAACAATAG
CAAGCGCGATTTGGGCGACATCGTCAACAGCCCCATCGTGGCGGTCGGCGGGTATTTGGCTACTTCCGCCAACGACGGGA
TGGTGCATATCTTCAAAAAAGGCAACGGGGACGCGCGCAACTATAGTCTGAAGCTCAGCTACATCCCCGGCACGATGCCG
CGCAAAGATATTGAAAGCAAAGAATCCACCCTTGCCAAAGAGCTGCGCGCCTTTGCCGAAAAAAGCTATGTGGGCGACCG
CTACGGCGTGGACGGCGGCTTTGTCTTGCGCGAAGTCGAACGGGACGGGAAAACCCGCGTGTTTATGTTCGGCGCGATGG
GTTTTGGCGGCAGAGGCGCGTATGCCTTGGATTTGACCAAAGCCGACGGCAGTGACCCGACCGCCGTTTCCCTGTTTGAT
GTCAAAAATGACAATAATAGCGTGCAATTAGGCTACACCGTCGGCACGCCGCAAATCGGCAAAACCCACAACGGCAAATA
CGCCGCCTTCCTCGCCTCCGGTTATGCGACTAAAGACATTAACAACGGCGAGAATAAAACCGCGCTGTATGTGTATGATT
TGGAAAACAACAACGGTACGCCGATTGCAAAAATCGAAGTGAAGGACGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTG
GATAAAGATTTGGACGGCACGGTCGATATCGCCTATGCCGGCGATCGCGGCGGCAGTATGTACCGCTTTGATTTGAGCAA
TCAAGATCCTAGTCAATGGACTGTACGCACTATTTTCCAAGGCACGAAGCCGATTACTTCCGCGCCCGCCATTTCCCAAC
TGAAAGACAAACGCGTGGTTATCTTCGGCACGGGCAGCGATTTGAGTGAAGAGGATGTGGACAAAAAGGACGAACAATAT
ATTTACGGTATCTTTGACGACGATACGGCGGCGAGTAATGTAGATGTAAAACTCAAAGGTTTGGGAGGCGGGTTGCTCGA
GCAGGTGCTTGAGCAGAAGGATAAAACCTTATTCCTGACCGATTATAAGCGATCCGACGGCTCGGGCAGCAAAGGGTGGG
TAGTGAAATTGAAGGACGGACAGCGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTAACCATCCGCAAA
TATACTGACAACGGCTGCGGCGCGGAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCAAGCTGACCAAGAAAAG
CGCGCGCCCGATTGTGCCGGACGCCAATAAGGATGTCGCGCAATATTCCGGTCATAAGAAAGGCATCAACGGCAAATCCA
TCCCTATAGGTTGTATGCAAAAAGGCAATGAAATCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGT
TATCTGGATGAAAAGAAAACAGACGGATTTTCAACAACGGCAGACGGTGATGCGGGCGGCAGCGGTATAGACCCCGACGG
CAAGCGTGCCGGCAAAAACAACCGCTGCTTCTCCCAAAAAGGGGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGG
ACATTGCCGGTCCGACGTGCGGTATGAAACGAATCAGCTGGCGTGAAATCTTCTACTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(511-840)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

79.752

100

0.809

Multiple sequence alignment