Detailed information NTG0222705

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: A6J50_RS03335
• Genome accession: NZ_CP020422
• Coordinates: 564905..565765 (+)
• Length: 286 a.a.
• NCBI ID: WP_002221969.1
• Uniprot ID: -
• Organism: Neisseria meningitidis strain FDAARGOS_211
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 559905..570765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6J50_RS03310 (A6J50_03250)	dapD	560415..561236 (-)	822	WP_002216408.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
A6J50_RS03315 (A6J50_03255)	-	561246..561476 (-)	231	WP_025462714.1	hypothetical protein	-
A6J50_RS03320 (A6J50_03260)	pgi	561446..563089 (-)	1644	WP_002220279.1	glucose-6-phosphate isomerase	-
A6J50_RS03330 (A6J50_03265)	pilG	563599..564831 (+)	1233	WP_002216405.1	type 4 pilus assembly protein PilG	Machinery gene
A6J50_RS03335 (A6J50_03270)	pilD	564905..565765 (+)	861	WP_002221969.1	A24 family peptidase	Machinery gene
A6J50_RS03340 (A6J50_03275)	coaE	565767..566399 (+)	633	WP_002243235.1	dephospho-CoA kinase	-
A6J50_RS03345 (A6J50_03280)	-	566392..566601 (+)	210	WP_002212333.1	DNA gyrase inhibitor YacG	-
A6J50_RS03350 (A6J50_03285)	pilF	566686..568362 (-)	1677	WP_080541848.1	type IV-A pilus assembly ATPase PilB	Machinery gene
A6J50_RS03370 (A6J50_03295)	-	568853..569299 (-)	447	WP_014581766.1	DUF441 domain-containing protein	-
A6J50_RS03375 (A6J50_03300)	ispB	569303..570277 (-)	975	WP_002235439.1	octaprenyl diphosphate synthase	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31302.40 Da
• Isoelectric Point: 8.9527

>NTDB_id=222705 A6J50_RS03335 WP_002221969.1 564905..565765(+) (pilD) [Neisseria meningitidis strain FDAARGOS_211]
MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVFAKKHLNLPLTEEESRTFNLMKPDSCCPKCRVPIRAR
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLIKGEIGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVL

Nucleotide

• Length: 861 bp

>NTDB_id=222705 A6J50_RS03335 WP_002221969.1 564905..565765(+) (pilD) [Neisseria meningitidis strain FDAARGOS_211]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCGGTGTTCGGGCTGCTGGTCGGCAGTTTCTTAAA
CGTCGTCATTTACCGCGTGCCGGTCATGATGGAACGCGGCTGGACGGTATTTGCCAAAAAACATTTAAACCTGCCGCTGA
CCGAAGAGGAAAGCCGTACCTTCAACCTGATGAAACCGGATTCCTGCTGTCCCAAATGTCGCGTGCCGATACGCGCGCGG
CAGAACATCCCGATTGTCAGCTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTTGCCTGGCAATACGGCTGGTCTTGGATTACATTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACCTTACCC
TTGATTTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATGGTTCGATATGGCTTTTATGCGCGGTATATAAACTGATTAAAGGCGAAATCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCGCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCAGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	95.789	99.65	0.955
pilD	Vibrio cholerae strain A1552	44.444	100	0.448
pilD	Vibrio campbellii strain DS40M4	44.928	96.503	0.434
pilD	Acinetobacter baumannii D1279779	46.97	92.308	0.434
pilD	Acinetobacter nosocomialis M2	46.97	92.308	0.434