Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6J49_RS14210 Genome accession   NZ_CP020421
Coordinates   568541..569005 (+) Length   154 a.a.
NCBI ID   WP_162467382.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_210     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 563541..574005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J49_RS14210 comE 568541..569005 (+) 465 WP_162467382.1 ComEA family DNA-binding protein Machinery gene
  A6J49_RS14585 (A6J49_03155) - 569119..569556 (-) 438 Protein_537 HK97 family phage prohead protease -
  A6J49_RS03290 (A6J49_03160) - 569668..570261 (-) 594 WP_002218492.1 hypothetical protein -
  A6J49_RS03295 (A6J49_03165) prmB 570406..571305 (+) 900 WP_002232685.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  A6J49_RS03305 (A6J49_03175) - 571586..572323 (+) 738 WP_002223538.1 toxin-antitoxin system YwqK family antitoxin -
  A6J49_RS03310 (A6J49_03180) - 572449..572721 (+) 273 WP_002218494.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16587.88 Da        Isoelectric Point: 10.8645

>NTDB_id=222691 A6J49_RS14210 WP_162467382.1 568541..569005(+) (comE) [Neisseria meningitidis strain FDAARGOS_210]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=222691 A6J49_RS14210 WP_162467382.1 568541..569005(+) (comE) [Neisseria meningitidis strain FDAARGOS_210]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGTGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGACCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment