Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   C2H95_RS14720 Genome accession   NZ_CP026037
Coordinates   2889363..2890853 (-) Length   496 a.a.
NCBI ID   WP_038828563.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2884363..2895853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H95_RS14690 (C2H95_14625) gudB 2884499..2885773 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  C2H95_RS14695 (C2H95_14630) mecB 2885930..2886514 (-) 585 WP_003230533.1 genetic competence negative regulator -
  C2H95_RS14700 (C2H95_14635) ypbG 2886673..2887452 (-) 780 WP_003230532.1 metallophosphoesterase -
  C2H95_RS14705 (C2H95_14640) ypbF 2887540..2887983 (-) 444 WP_003230531.1 YpbF family protein -
  C2H95_RS14710 (C2H95_14645) ypbE 2888046..2888783 (-) 738 WP_038828566.1 LysM peptidoglycan-binding domain-containing protein -
  C2H95_RS14715 (C2H95_14650) ypbD 2888734..2889336 (-) 603 WP_038828565.1 CPBP family intramembrane glutamic endopeptidase -
  C2H95_RS14720 (C2H95_14655) recS 2889363..2890853 (-) 1491 WP_038828563.1 ATP-dependent DNA helicase RecQ Machinery gene
  C2H95_RS14725 (C2H95_14660) gmmB 2890846..2891904 (-) 1059 WP_014477210.1 helix-turn-helix domain-containing protein -
  C2H95_RS14730 (C2H95_14665) fer 2892170..2892418 (+) 249 WP_003225461.1 ferredoxin -
  C2H95_RS14735 (C2H95_14670) fmnP 2892458..2893030 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  C2H95_RS14740 (C2H95_14675) serA 2893527..2895104 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56562.11 Da        Isoelectric Point: 6.3928

>NTDB_id=222691 C2H95_RS14720 WP_038828563.1 2889363..2890853(-) (recS) [Bacillus subtilis strain PK5_17]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSYCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFNLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=222691 C2H95_RS14720 WP_038828563.1 2889363..2890853(-) (recS) [Bacillus subtilis strain PK5_17]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCGCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTCGA
GCTGCAGCATGCTGTACGGCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGCCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTAATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGAAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTTC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTACTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCATATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAACTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.395

100

0.994

Multiple sequence alignment