Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A6J49_RS04615 Genome accession   NZ_CP020421
Coordinates   783682..784206 (+) Length   174 a.a.
NCBI ID   WP_002212976.1    Uniprot ID   P66849
Organism   Neisseria meningitidis strain FDAARGOS_210     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 778682..789206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J49_RS14235 - 779797..779934 (+) 138 WP_192885823.1 hypothetical protein -
  A6J49_RS04585 (A6J49_04395) - 780112..780603 (+) 492 WP_002219860.1 REP-associated tyrosine transposase -
  A6J49_RS14610 - 780652..781060 (+) 409 Protein_728 hypothetical protein -
  A6J49_RS14240 - 781273..781503 (-) 231 WP_192941154.1 hypothetical protein -
  A6J49_RS04605 (A6J49_04420) - 781562..782185 (+) 624 WP_002219051.1 lytic transglycosylase domain-containing protein -
  A6J49_RS04610 (A6J49_04425) - 782296..783678 (+) 1383 WP_002225104.1 MFS transporter -
  A6J49_RS04615 (A6J49_04430) ssb 783682..784206 (+) 525 WP_002212976.1 single-stranded DNA-binding protein Machinery gene
  A6J49_RS04625 (A6J49_04440) - 784731..785654 (+) 924 WP_002225105.1 DMT family transporter -
  A6J49_RS04630 (A6J49_04445) fumC 785719..787107 (-) 1389 WP_002225106.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19452.65 Da        Isoelectric Point: 5.8354

>NTDB_id=222659 A6J49_RS04615 WP_002212976.1 783682..784206(+) (ssb) [Neisseria meningitidis strain FDAARGOS_210]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEEGYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=222659 A6J49_RS04615 WP_002212976.1 783682..784206(+) (ssb) [Neisseria meningitidis strain FDAARGOS_210]
ATGTCATTGAACAAAGTCATCCTCATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCGGT
TTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAACGTGTAGAGCGTACTGAGTGGCACAACA
TCACCATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATTTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAACGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGTGCGCCTTACGAGGAAGGTTACGGTCAGAGTCAGGAGGCTTACCAACGCCCCGCGC
AGCAAAGCCGGCAGCCCGCCTCCGACGCGCCGTCCCATCCCCAAGAAGCACCAGCCGCGCCGCGCCGCCAACCCGTGCCT
GCCGCCGCCCCGGTCGAGGACATTGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66849

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

100

100

1
  ssb Neisseria gonorrhoeae MS11

98.851

100

0.989
  ssb Vibrio cholerae strain A1552

47.778

100

0.494
  ssb Glaesserella parasuis strain SC1401

43.956

100

0.46

Multiple sequence alignment