Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   A6J49_RS02895 Genome accession   NZ_CP020421
Coordinates   490653..493853 (+) Length   1066 a.a.
NCBI ID   WP_105165273.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_210     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 485653..498853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J49_RS02870 (A6J49_02750) ccoO 486799..487410 (+) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -
  A6J49_RS02875 (A6J49_02755) - 487415..487585 (+) 171 WP_002212597.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  A6J49_RS02880 (A6J49_02760) ccoP 487609..488940 (+) 1332 Protein_469 cytochrome-c oxidase, cbb3-type subunit III -
  A6J49_RS02890 (A6J49_02770) - 489142..490551 (+) 1410 WP_002224963.1 PepSY domain-containing protein -
  A6J49_RS02895 (A6J49_02775) recC 490653..493853 (+) 3201 WP_105165273.1 exodeoxyribonuclease V subunit gamma Machinery gene
  A6J49_RS02900 (A6J49_02780) mtrF 493923..495491 (-) 1569 WP_002224966.1 AbgT family antimetabolite efflux transporter MtrF -
  A6J49_RS02905 (A6J49_02785) - 495825..496037 (+) 213 WP_002244266.1 hypothetical protein -
  A6J49_RS02910 (A6J49_02790) mtrR 496316..496948 (-) 633 WP_002216625.1 multidrug efflux system transcriptional repressor MtrR -
  A6J49_RS14205 - 497038..497196 (+) 159 WP_192941159.1 hypothetical protein -
  A6J49_RS02915 (A6J49_02795) mtrC 497352..498590 (+) 1239 WP_002224968.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -

Sequence

Protein


Download         Length: 1066 a.a.        Molecular weight: 120278.04 Da        Isoelectric Point: 4.8458

>NTDB_id=222657 A6J49_RS02895 WP_105165273.1 490653..493853(+) (recC) [Neisseria meningitidis strain FDAARGOS_210]
MFYLYQSNRLETLAALFARIQKVKPLKSALQPEQIIVQSQGMRRYLNTCLARDLGVAANLSFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLG
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLDSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGMYWG
NVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSEMAGSV
NTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISR
RQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAVER
MILGWMLPKGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLTDIVRIWRQPATVGEWVARCRDLLETLFQAEADDQKSVQ
NLENEWVKWQAETELAQFSGQLPPHTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKA
AVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNLI
EQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAW
SEPHIGEAWEPAEPFEPQHADQIAEIYIEARCEGRDFAQTAARIGAESLLPSGELGRLWQQDFQTAAKQIDTAVLNSPKL
PPLSYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAEMRQTFIVQSGETEILAEIAQDR
ALQLLSEWMAFFNIGQNRPLPFFAKTSLATAEAFAQKQDWEAALKKAQTAYHGSKVSKGQKDYTEVALVFGNASQNPLEQ
PLFENLVRLLADTLAAAEKKEEAGEA

Nucleotide


Download         Length: 3201 bp        

>NTDB_id=222657 A6J49_RS02895 WP_105165273.1 490653..493853(+) (recC) [Neisseria meningitidis strain FDAARGOS_210]
ATGTTTTATCTGTATCAATCCAACCGTCTTGAAACGCTGGCGGCATTGTTTGCCCGCATTCAAAAAGTCAAACCGCTGAA
ATCGGCTTTACAGCCCGAACAGATTATTGTGCAGAGTCAGGGGATGCGCCGCTACCTCAATACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGTCGTTCAGCCTGCCCGCCGGCCTGACGTGGAAGCTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCGCCCGAAGTCATGCGCTGGCGGCTGCTGGATTTGTTCCGCAGCGAGGCATTTCGGAATAC
GGCAGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTGGGCAGCGGCGAATCGGCAGATTACCAGCTTGCGGGAC
AGCTTGCGGACATATTCGACCAATACCTCGTGTACCGTCCTCAGTGGATAGACGCTTGGCAGCAGGGCAGGCGGCTCGGT
TTGGGCGACGACGAAATCTGGCAGTCCAAACTGTGGCGTTACCTCGACGACGGCAGGCAGAGCGCGCCGCACCGTGTCGC
GTTGTGGGAAAAGCTGTTGGACAGTGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGGCGCCGATGT
ATTTGCAACTTTTGCACAAGCTGTCCGAACATTGCGACGTGTTCGTGTTCGCACTCAATCCGAGCGGGATGTACTGGGGC
AACGTCATCGAAGCGGCGCAAATCCTCAAAGGTGGCGGCGATCCCGATTTAACTCAGGCAGGGCATCCGCTGCTCGCCTC
ATTGGGCAAGCAGGGGCGGGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGGCGAAACGCCGGTATTTGAGGAAG
GCGGGCGCGATACGCTTTTACACGCCCTGCAAACCGATATTCAAAACCTGAAAATGCCGTCTGAAATGGCGGGAAGCGTC
AACACGGGCGACGGCTCGATACGCATCGTCTCCGCACACAGCCCTTTGCGCGAATTGCAGATACTCAAAGACAAGCTGTT
GAAAATTCTGCATGAACATCCCGATTGGCAGCCGCACGATATCGCCGTATTAACCCCGAATATCGAATCCTATACGCCTT
TTATCGAAGCCGTGTTCGGACAGGCGCAGCCCGGTGCGCAGGCATTGCCGTATTCCGTGTCAGACGTGAAAATCAGCCGC
CGCCAACCGCTGTTTCATGCTTTGTCATGCCTGTTCGACTTGTTGGAAAGCCGATTTGAAGTCGATAAAGTGCTTGTGCT
TTTAGAAACCGCGCCCGTGTTGCGCCGTTTCGGACTGACTGAGGACGATTTACCGCTTTTGCACGACATGGTTGCCGATT
TGAACGTCCACTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTGTTCACCTGGAAGCAGGCGGTAGAACGC
ATGATATTGGGCTGGATGCTGCCCAAAGGCGGCAATCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGACGTGAATCA
AACCGCCATGTTCGGACGTTTTGCCGCCTTCCTCGAAACCCTGACGGATATTGTACGGATATGGCGGCAGCCCGCAACGG
TCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAACATTGTTCCAAGCTGAAGCCGATGACCAAAAGTCAGTCCAA
AACCTTGAAAACGAATGGGTCAAATGGCAGGCGGAAACCGAATTGGCGCAATTTTCCGGACAGTTGCCGCCGCACACCGT
CATCCGCCATATCCGACGCTTTCTCGACAGCGAAAGCGAGGCAGGCTTTTTACGCGGCGGCATCACCTTTTGCAGTATGG
TGCCGATGCGGAGCCTGCCGTTCAAAGTCATCTGCCTGTTGGGTTTGAACGACGGAGATTTTCCCCGTAATACCAAAGCC
GCCGTATTCGACCTGATTGCCAAACATCCCGCCAAAGGAGACCGCGCCCGCCGCGATGACGACCGCTACCTGTTCCTCGA
AGCCCTCATCAGCGCGCGTGAAATCCTCTACCTGTCCTACATCGGGCGCGACATCCGCAAAGACGAAGAGCTTGCCCCGT
CTTCCCTGTTGGGCGAACTCATCGATACCGTTGCCGCTATGGCGGGCATCGGTAGCCGCCAACTTGCACAAAACCTGATA
GAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTTCAAGAAGGCGGACGTTCAGACGGCATATTCGGCACGCGTAC
CGACTACGCCGCCGCGCTCGGACAAACGCCCGAACCGCCGCAACCCTTTTTCGATCAACCCGTAGAAAACGCCGAACCTG
TTGCCGAAATCGGACAGGACGAATTTATCCGTTTCTGGCGCAACCCTGTCAAAGTATGGCTTCAGCAGCAGCTTGCGTGG
AGCGAACCCCATATCGGCGAAGCCTGGGAGCCTGCCGAACCCTTCGAGCCGCAACACGCCGATCAAATCGCCGAAATCTA
CATCGAAGCACGGTGCGAAGGACGGGATTTTGCCCAAACCGCCGCCCGCATCGGGGCGGAAAGCCTCCTGCCGTCGGGAG
AGTTGGGCAGACTTTGGCAGCAGGACTTCCAAACTGCTGCCAAACAAATCGACACGGCGGTTTTAAACAGCCCCAAACTG
CCACCGCTTTCATATGCCATACCGTCGGACGGGCAAATCCTGAAAGGCAGCTTGGGCAATCTGTACCGCTGCGGACAAGT
GTTTTACGCCTACGGCAAACCCAACGCGCCGCAACGTATCGCTTTTCTGCTGGAACACCTGATATTTTGCGCCGTTATGC
CGTCTGAAGCCGAAATGCGGCAAACCTTTATCGTCCAATCCGGAGAAACCGAAATATTGGCGGAAATCGCGCAAGACAGG
GCATTGCAGCTATTGTCGGAATGGATGGCGTTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGCCAAAACCTC
GCTTGCCACCGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCCGCCCTGAAAAAAGCCCAAACCGCCTACCACGGCA
GCAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCGCTCGAACAG
CCCCTGTTTGAAAACCTCGTCCGTCTGCTTGCCGACACGCTTGCCGCAGCGGAAAAAAAGGAAGAGGCCGGAGAAGCCTG
A

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-309)

RecC C-terminal domain (RecC_C)

(775-994)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

93.265

100

0.935

Multiple sequence alignment