Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   A6J48_RS07545 Genome accession   NZ_CP020420
Coordinates   1272949..1273284 (+) Length   111 a.a.
NCBI ID   WP_105182938.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_209     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1267949..1278284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J48_RS07520 (A6J48_07410) metG 1268686..1270740 (+) 2055 WP_082308719.1 methionine--tRNA ligase -
  A6J48_RS07525 (A6J48_07415) - 1270815..1271768 (-) 954 WP_082308654.1 D-2-hydroxyacid dehydrogenase -
  A6J48_RS07530 (A6J48_07420) - 1271890..1272108 (+) 219 WP_082308655.1 DUF2061 domain-containing protein -
  A6J48_RS07535 (A6J48_07425) - 1272186..1272515 (+) 330 WP_002216146.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  A6J48_RS14030 - 1272544..1272756 (+) 213 Protein_1278 pilin -
  A6J48_RS07545 (A6J48_07435) pilE 1272949..1273284 (+) 336 WP_105182938.1 pilin Machinery gene
  A6J48_RS07550 (A6J48_07440) - 1273277..1273588 (+) 312 Protein_1280 pilin -
  A6J48_RS07570 (A6J48_07465) lpxC 1274614..1275537 (+) 924 WP_002246555.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  A6J48_RS07580 (A6J48_07470) gnd 1276724..1278172 (+) 1449 WP_002247197.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 11859.13 Da        Isoelectric Point: 9.6561

>NTDB_id=222626 A6J48_RS07545 WP_105182938.1 1272949..1273284(+) (pilE) [Neisseria meningitidis strain FDAARGOS_209]
MTGFNDAAGVASSSDIKGKYVQKVEVAKGVITAQMASSNVNNEIKGKKLSLWAKRQNGSVKWFCGQPVQRDKADADADAI
TADTAANKKIDTNHSHEPTSRHSRESGNDGI

Nucleotide


Download         Length: 336 bp        

>NTDB_id=222626 A6J48_RS07545 WP_105182938.1 1272949..1273284(+) (pilE) [Neisseria meningitidis strain FDAARGOS_209]
ATGACGGGATTTAATGATGCCGCCGGCGTGGCATCCTCCTCCGACATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCGC
AAAAGGCGTCATTACCGCCCAAATGGCTTCAAGCAACGTAAACAATGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCA
AGCGTCAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGCGCGACAAAGCCGACGCCGACGCCGATGCCATT
ACCGCCGACACCGCCGCCAACAAGAAGATCGACACCAATCATTCCCACGAACCTACATCCCGTCATTCCCGCGAAAGTGG
GAATGACGGGATTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(6-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

71.111

81.081

0.577
  pilE Neisseria gonorrhoeae MS11

65.934

81.982

0.541

Multiple sequence alignment