Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   C2H93_RS18405 Genome accession   NZ_CP026036
Coordinates   3617627..3618421 (-) Length   264 a.a.
NCBI ID   WP_021481078.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_16     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3612627..3623421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS18380 (C2H93_18390) rocD 3613213..3614418 (-) 1206 WP_249852430.1 ornithine aminotransferase -
  C2H93_RS18385 (C2H93_18395) rocR 3614659..3616044 (+) 1386 WP_003244510.1 arginine utilization regulatory protein RocR -
  C2H93_RS18390 (C2H93_18400) - 3616026..3616172 (-) 147 Protein_3620 ATP-binding protein -
  C2H93_RS18395 - 3616197..3616323 (-) 127 Protein_3621 hypothetical protein -
  C2H93_RS18400 (C2H93_18405) htrA 3616343..3617545 (-) 1203 WP_021481077.1 serine protease HtrC Regulator
  C2H93_RS18405 (C2H93_18410) vicX 3617627..3618421 (-) 795 WP_021481078.1 MBL fold metallo-hydrolase Regulator
  C2H93_RS18410 (C2H93_18415) walI 3618443..3619285 (-) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  C2H93_RS18415 (C2H93_18420) walH 3619272..3620639 (-) 1368 WP_072175742.1 WalRK two-component regulatory system regulator WalH -
  C2H93_RS18420 (C2H93_18425) walK 3620629..3622464 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  C2H93_RS18425 (C2H93_18430) walR 3622472..3623179 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29282.34 Da        Isoelectric Point: 6.2282

>NTDB_id=222570 C2H93_RS18405 WP_021481078.1 3617627..3618421(-) (vicX) [Bacillus subtilis strain PK5_16]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGKTFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=222570 C2H93_RS18405 WP_021481078.1 3617627..3618421(-) (vicX) [Bacillus subtilis strain PK5_16]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTGAAGTCGTTTGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTGTTCC
ATTATAACGGCCGAAAGCTCGCATTAATGACAGATACGGGATATGTCAGCGACCGAATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTAAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53

Multiple sequence alignment