Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6J46_RS01865 Genome accession   NZ_CP020419
Coordinates   297519..297908 (+) Length   129 a.a.
NCBI ID   WP_225577445.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FDAARGOS_207     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 292519..302908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J46_RS13855 (A6J46_01865) - 297298..297414 (+) 117 Protein_314 competence protein ComE -
  A6J46_RS01865 (A6J46_01870) comE 297519..297908 (+) 390 WP_225577445.1 helix-hairpin-helix domain-containing protein Machinery gene
  A6J46_RS01880 (A6J46_01880) - 298433..298762 (-) 330 Protein_316 transposase -
  A6J46_RS01885 (A6J46_01885) dnaJ 298896..300017 (+) 1122 WP_010951367.1 molecular chaperone DnaJ -
  A6J46_RS01890 (A6J46_01890) - 300212..301248 (+) 1037 Protein_318 OPT family oligopeptide transporter -
  A6J46_RS01895 (A6J46_01895) rfbC 301292..301849 (-) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  A6J46_RS01900 (A6J46_01900) rfbA 301987..302853 (-) 867 WP_010359534.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 13597.35 Da        Isoelectric Point: 10.8280

>NTDB_id=222561 A6J46_RS01865 WP_225577445.1 297519..297908(+) (comE) [Neisseria gonorrhoeae strain FDAARGOS_207]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAIAEYRA
QNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 390 bp        

>NTDB_id=222561 A6J46_RS01865 WP_225577445.1 297519..297908(+) (comE) [Neisseria gonorrhoeae strain FDAARGOS_207]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCCATTGCGGAATACCGCGCG
CAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCTGAAAGA
CCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

98.473

100

1
  comE Neisseria gonorrhoeae MS11

98.473

100

1
  comE Neisseria gonorrhoeae MS11

98.473

100

1
  comE Neisseria gonorrhoeae MS11

98.473

100

1

Multiple sequence alignment