Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   A6J43_RS11820 Genome accession   NZ_CP020415
Coordinates   2010222..2010572 (+) Length   116 a.a.
NCBI ID   WP_082277705.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FDAARGOS_204     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2005222..2015572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J43_RS11800 (A6J43_11795) metG 2006169..2008223 (+) 2055 WP_003696311.1 methionine--tRNA ligase -
  A6J43_RS11805 (A6J43_11800) - 2008298..2008606 (-) 309 Protein_2039 NAD(P)-dependent oxidoreductase -
  A6J43_RS14285 - 2008610..2008933 (+) 324 Protein_2040 pilin -
  A6J43_RS14290 - 2008973..2009329 (+) 357 Protein_2041 pilin -
  A6J43_RS11815 (A6J43_11815) - 2009793..2010185 (+) 393 Protein_2042 pilin -
  A6J43_RS11820 (A6J43_11820) pilE 2010222..2010572 (+) 351 WP_082277705.1 pilin Machinery gene
  A6J43_RS11830 (A6J43_11830) thiC 2011061..2012962 (-) 1902 WP_082277781.1 phosphomethylpyrimidine synthase ThiC -
  A6J43_RS11845 (A6J43_11845) - 2013560..2014435 (+) 876 WP_003686971.1 NUDIX hydrolase family protein -
  A6J43_RS11850 (A6J43_11850) - 2014444..2015385 (+) 942 WP_003686969.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12697.16 Da        Isoelectric Point: 9.5444

>NTDB_id=222503 A6J43_RS11820 WP_082277705.1 2010222..2010572(+) (pilE) [Neisseria gonorrhoeae strain FDAARGOS_204]
MSNKSALTGHYPNNGEWPKDNDSAGVASASKIIGKYVKQVEVKNGVVTAQMASSNVNKEIKDKKLSLWARRQDGSVKWFC
GQPVTRNANDDVTADADKKIDTKHLPSTCRDNFDAS

Nucleotide


Download         Length: 351 bp        

>NTDB_id=222503 A6J43_RS11820 WP_082277705.1 2010222..2010572(+) (pilE) [Neisseria gonorrhoeae strain FDAARGOS_204]
ATTTCAAATAAATCAGCCCTCACCGGGCATTACCCGAATAACGGCGAATGGCCCAAAGACAACGACTCTGCCGGCGTGGC
ATCCGCTTCAAAAATCATAGGCAAATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCCAAATGGCTTCAA
GCAACGTAAACAAAGAAATCAAAGACAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGC
GGACAGCCGGTTACGCGCAACGCCAACGACGACGTTACCGCCGACGCCGACAAAAAAATCGACACCAAGCACCTGCCGTC
AACCTGCCGCGATAACTTTGATGCCAGCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(4-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.913

99.138

0.733
  pilE Neisseria gonorrhoeae MS11

71.429

96.552

0.69

Multiple sequence alignment