Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   A6J43_RS10385 Genome accession   NZ_CP020415
Coordinates   1770840..1773014 (+) Length   724 a.a.
NCBI ID   WP_082277635.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FDAARGOS_204     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1765840..1778014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J43_RS10365 (A6J43_10370) pilM 1767893..1769008 (+) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  A6J43_RS10370 (A6J43_10375) pilN 1769011..1769610 (+) 600 WP_010356666.1 PilN domain-containing protein Machinery gene
  A6J43_RS10375 (A6J43_10380) - 1769611..1770258 (+) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  A6J43_RS10380 (A6J43_10385) pilP 1770276..1770821 (+) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  A6J43_RS10385 (A6J43_10390) pilQ 1770840..1773014 (+) 2175 WP_082277635.1 type IV pilus secretin PilQ Machinery gene
  A6J43_RS10400 (A6J43_10400) - 1774284..1774796 (+) 513 WP_003687349.1 shikimate kinase -
  A6J43_RS10410 (A6J43_10410) aroB 1774876..1775955 (+) 1080 WP_003690567.1 3-dehydroquinate synthase -
  A6J43_RS10425 (A6J43_10425) - 1776694..1777536 (+) 843 WP_003687345.1 class II glutamine amidotransferase -

Sequence

Protein


Download         Length: 724 a.a.        Molecular weight: 78022.01 Da        Isoelectric Point: 10.0021

>NTDB_id=222499 A6J43_RS10385 WP_082277635.1 1770840..1773014(+) (pilQ) [Neisseria gonorrhoeae strain FDAARGOS_204]
MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKVSFDKEIVNPTGFVTSSPARIALDFEQTGISMDQQVL
EYADPLLSKISAAQNSSRARLVLNLNKPGQYNTEVRGNKVWIFINESDDTVSAPARPAVKAAPAAPAKQQAAAPFTESVV
SVSAPFSPAKQQAAASAKQTNIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNHTLPTALQRSLDVADFKTPV
QKVTLKRLNNDTQLIITTTGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKTFTGRKISLDFQDVEIRTILQILAK
ESGMNIVASDSVSGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKAFLQAEKDIADLGALYSQNF
QLKYKNVEEFRSILRLDNAADTTGNRNTLVSGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQVMIEARIVEA
ADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGGGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLS
KTKTLANPRVLTQNRKEAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQCASG
NNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFITPRIIDTAGN
SLRY

Nucleotide


Download         Length: 2175 bp        

>NTDB_id=222499 A6J43_RS10385 WP_082277635.1 1770840..1773014(+) (pilQ) [Neisseria gonorrhoeae strain FDAARGOS_204]
ATGAATACCAAACTGACAAAAATCATTTCCGGTCTCTTTGTCGCAACCGCCGCCTTTCAGACGGCATCGGCAGGAAACAT
TACAGACATCAAAGTTTCCTCCCTGCCCAACAAACAGAAAATCGTCAAAGTCAGCTTTGACAAAGAGATTGTCAACCCGA
CCGGCTTCGTAACCTCCTCACCGGCCCGCATCGCCTTGGACTTTGAACAAACCGGCATTTCCATGGATCAACAGGTACTC
GAATATGCCGATCCTCTGTTGAGCAAAATCAGTGCCGCACAAAACAGCAGCCGTGCGCGTCTGGTTCTGAATTTGAACAA
ACCGGGCCAATACAATACCGAAGTACGCGGGAACAAAGTTTGGATATTCATTAACGAATCGGACGATACCGTGTCCGCCC
CCGCCCGCCCAGCCGTAAAAGCCGCGCCTGCCGCACCGGCAAAACAACAGGCTGCCGCACCGTTTACCGAGTCCGTAGTA
TCCGTATCCGCACCGTTCAGCCCGGCAAAACAACAGGCAGCGGCATCGGCAAAACAAACCAATATCGATTTCCGCAAAGA
CGGCAAAAATGCCGGCATTATCGAATTGGCGGCATTGGGCTTTGCCGGGCAGCCCGACATCAGCCAACAGCACGACCACA
TCATCGTTACGCTGAAAAACCATACCCTGCCGACCGCGCTCCAACGCAGTTTGGATGTGGCAGACTTCAAAACACCGGTT
CAAAAGGTTACGCTGAAACGCCTCAATAACGACACCCAGCTGATTATCACAACAACCGGCAACTGGGAACTCGTCAACAA
ATCCGCCGCGCCCGGATACTTTACCTTCCAAGTCCTGCCGAAAAAACAAAACCTCGAGTCAGGCGGCGTGAACAATGCGC
CCAAAACCTTCACAGGCCGGAAAATCTCCCTTGACTTCCAAGATGTCGAAATCCGCACCATCCTGCAGATTTTGGCAAAA
GAATCCGGGATGAACATTGTTGCCAGCGACTCCGTCAGCGGCAAAATGACCCTCTCCCTCAAAGACGTACCTTGGGATCA
GGCTTTGGATTTGGTTATGCAGGCGCGCAACCTCGATATGCGCCAGCAAGGGAACATCGTCAACATCGCGCCCCGCGACG
AGCTGCTTGCCAAAGACAAAGCCTTCTTACAAGCGGAAAAAGACATTGCCGATCTGGGCGCGCTGTATTCCCAAAACTTC
CAATTGAAATACAAAAATGTGGAAGAATTCCGCAGCATCCTGCGTTTGGACAATGCCGCCGACACGACCGGAAACCGCAA
CACGCTTGTCAGCGGCAGGGGCAGCGTGCTGATCGATCCCGCCACCAACACCCTGATTGTTACCGATACCCGCAGCGTCA
TCGAAAAATTCCGCAAACTGATTGACGAATTGGACGTACCCGCGCAACAAGTGATGATTGAGGCGCGTATCGTCGAAGCG
GCAGACGGCTTCTCGCGCGATTTGGGCGTTAAGTTCGGCGCGACAGGCAGGAAAAAACTGAAAAATGAGACGAGCGCATT
CGGCTGGGGCGTGAACTCCGGCTTCGGGGGCGGCGATAAATGGGAGGCCCAAACCAAAATCAACCTGCCGGTTGCCGCTG
CCGCAAACAGCATTTCGCTGGTGCGCGCGATTTCCTCCGGCGCGTTGAATTTGGAATTGTCCGCATCCGAGTCGCTTTCA
AAAACCAAAACGCTTGCCAATCCGCGCGTGCTGACCCAAAACCGCAAAGAGGCCAAAATCGAATCCGGTTACGAAATTCC
TTTTACCGTAACTACAGCCTCGGGCGGCGGCAACTCTACCAACACGGAACTCAAAAAAGCCGTCTTGGGGCTGACCGTTA
CGCCGAACATCACGCCCGACGGACAAATCATCATGACCGTCAAAATCAACAAAGACTCGCCTGCACAATGTGCTTCAGGC
AACAACACAATCCTATGTATTTCGACCAAAAGCCTGAATACGCAGGCTATGGTTGAAAACGGCGGCACTTTGATTGTCGG
CGGTATTTATGAAGAAAACAACGGCAATACGCTGACCAAAGTCCCCCTGTTGGGCGACATCCCCGTTATCGGCAACCTCT
TTAAAACACGCGGGAAAAAAACCGACCGCCGCGAACTGCTGATTTTCATTACCCCGAGGATTATAGATACGGCCGGCAAC
AGCCTGCGCTATTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(43-116)

Bacterial type II/III secretion system short domain (Secretin_N)

(398-470)

Secretin and TonB N terminus short domain (STN)

(325-370)

Bacterial type II and III secretion system protein (Secretin)

(556-716)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

99.862

100

0.999
  pilQ Neisseria meningitidis MC58

89.87

100

0.956
  pilQ Neisseria meningitidis M1080

90.682

100

0.954

Multiple sequence alignment