Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A6J43_RS09315 Genome accession   NZ_CP020415
Coordinates   1592623..1593426 (+) Length   267 a.a.
NCBI ID   WP_003687645.1    Uniprot ID   A0AA44ZGK5
Organism   Neisseria gonorrhoeae strain FDAARGOS_204     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1587623..1598426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J43_RS09285 (A6J43_09310) holA 1587635..1588633 (-) 999 WP_003687654.1 DNA polymerase III subunit delta -
  A6J43_RS09290 (A6J43_09315) lptE 1588635..1589114 (-) 480 WP_003692715.1 LPS assembly lipoprotein LptE -
  A6J43_RS09295 (A6J43_09320) pgeF 1589166..1589945 (-) 780 WP_003687651.1 peptidoglycan editing factor PgeF -
  A6J43_RS09300 (A6J43_09325) - 1590097..1590321 (+) 225 WP_225577482.1 hypothetical protein -
  A6J43_RS09305 (A6J43_09330) - 1590398..1591363 (+) 966 Protein_1617 bile acid:sodium symporter family protein -
  A6J43_RS09310 (A6J43_09335) rluD 1591500..1592624 (-) 1125 WP_003692709.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A6J43_RS09315 (A6J43_09340) comL 1592623..1593426 (+) 804 WP_003687645.1 outer membrane protein assembly factor BamD Machinery gene
  A6J43_RS09320 (A6J43_09345) comA 1593496..1595715 (-) 2220 WP_154017543.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A6J43_RS13870 - 1595747..1596022 (+) 276 WP_154212468.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30838.90 Da        Isoelectric Point: 9.1654

>NTDB_id=222492 A6J43_RS09315 WP_003687645.1 1592623..1593426(+) (comL) [Neisseria gonorrhoeae strain FDAARGOS_204]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=222492 A6J43_RS09315 WP_003687645.1 1592623..1593426(+) (comL) [Neisseria gonorrhoeae strain FDAARGOS_204]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGACAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAGTCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACGAAGATCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

100

100

1
  comL Neisseria meningitidis MC58

96.255

100

0.963

Multiple sequence alignment