Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6J43_RS00945 Genome accession   NZ_CP020415
Coordinates   162297..162692 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FDAARGOS_204     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 157297..167692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J43_RS13950 (A6J43_00915) - 162076..162192 (+) 117 Protein_158 competence protein ComE -
  A6J43_RS00945 (A6J43_00920) comE 162297..162692 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  A6J43_RS14320 (A6J43_00930) - 163326..163565 (-) 240 WP_010359213.1 membrane protein -
  A6J43_RS14325 (A6J43_00935) - 163562..163858 (-) 297 WP_003698944.1 hypothetical protein -
  A6J43_RS00970 (A6J43_00945) aroG 164474..165529 (+) 1056 WP_003689853.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  A6J43_RS00975 (A6J43_00950) - 165597..166085 (+) 489 WP_025456375.1 dihydrofolate reductase -
  A6J43_RS00980 (A6J43_00955) - 166115..166590 (-) 476 Protein_164 CYTH domain-containing protein -
  A6J43_RS00985 (A6J43_00960) - 166602..167030 (-) 429 WP_105183537.1 CopD family protein -
  A6J43_RS00995 (A6J43_00970) - 167142..167387 (+) 246 WP_003689849.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=222464 A6J43_RS00945 WP_003703428.1 162297..162692(+) (comE) [Neisseria gonorrhoeae strain FDAARGOS_204]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=222464 A6J43_RS00945 WP_003703428.1 162297..162692(+) (comE) [Neisseria gonorrhoeae strain FDAARGOS_204]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment