Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   TLL_RS11885 Genome accession   NC_004113
Coordinates   2434990..2436687 (-) Length   565 a.a.
NCBI ID   WP_011058172.1    Uniprot ID   -
Organism   Thermosynechococcus vestitus BP-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2429990..2441687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TLL_RS11870 (tll2336) - 2430910..2432631 (-) 1722 WP_164921029.1 pilus assembly PilX family protein -
  TLL_RS11875 (tlr2337) - 2433063..2434367 (+) 1305 WP_231833785.1 NCS2 family permease -
  TLL_RS11880 (tlr2338) - 2434417..2434929 (+) 513 WP_011058171.1 adenine phosphoribosyltransferase -
  TLL_RS11885 (tll2339) comA 2434990..2436687 (-) 1698 WP_011058172.1 DUF655 domain-containing protein Machinery gene
  TLL_RS11890 (tlr2340) - 2436807..2438054 (+) 1248 WP_011058173.1 acetate/propionate family kinase -
  TLL_RS11895 (tlr2341) pilM 2438335..2439414 (+) 1080 WP_164921030.1 type IV pilus biogenesis protein PilM Machinery gene
  TLL_RS11900 (tlr2342) - 2439426..2440127 (+) 702 WP_011058175.1 PilN domain-containing protein -
  TLL_RS11905 (tlr2343) - 2440124..2440861 (+) 738 WP_011058176.1 type 4a pilus biogenesis protein PilO -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63282.16 Da        Isoelectric Point: 9.5428

>NTDB_id=22241 TLL_RS11885 WP_011058172.1 2434990..2436687(-) (comA) [Thermosynechococcus vestitus BP-1]
MFWQKLKWRRHGVYLLLFVLGLLIAAVVFTQLRSHPIIRPSLKPLPQHPQIKVHMNHSPAHSYQEPYRPYTREGEDLEAI
MIEQIAKAQKSIDVAVQEFRLPNLAKALATRQQAGVRVRLVMENTYTAPWAKYTAAQVRAMDPRMRERYNDWKALVDTNG
DGQLSAAELSDRDVQTILNEAKIPWIDDTADGSKGSMLMHHKFIVIDNRQVIATTANFTLSDVHGDLGRPDTRGNANSLV
VIDSPAVARLFTEEFNMMWGDGPGGQPNSRFGVKKPVRPPQRVAVGDAMVTVRFSPTPRSQPWVTSTNGLIGQILGQARQ
KIDMALFVFSDQELSNVLEERHNQGVKIRALIDRGFIYRDFSEALDMMGVAMANTTQARQGNCYYEAANRPWPNPLQTVG
TPLLPEGDKLHHKYGVVDDRTVIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYEREFERLYSNSRLGLPQYVRDRIQQQL
TTCGGPIATRVAPASANRAPTPTSRVNLNTATAAELETLPGVGSKLAAEIIRAREHKPFQSLADLDAVPGVGPKLLERLR
DRVTW

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=22241 TLL_RS11885 WP_011058172.1 2434990..2436687(-) (comA) [Thermosynechococcus vestitus BP-1]
ATGTTTTGGCAAAAGCTGAAATGGCGGCGACATGGTGTGTATCTACTGTTGTTTGTCCTGGGGCTGTTAATTGCCGCAGT
GGTGTTTACCCAATTGCGATCGCACCCGATTATCCGCCCTTCCCTAAAGCCGCTGCCTCAACATCCGCAGATTAAGGTAC
ACATGAATCACTCCCCAGCCCACAGTTACCAAGAACCCTATCGCCCCTATACCCGTGAAGGGGAAGACCTTGAGGCAATT
ATGATTGAGCAGATTGCCAAGGCACAAAAGAGCATTGATGTGGCGGTGCAGGAGTTTCGCCTTCCGAATCTAGCCAAGGC
TCTGGCAACACGGCAGCAGGCAGGCGTACGGGTACGGCTGGTCATGGAGAATACCTACACTGCCCCTTGGGCAAAATACA
CTGCAGCTCAAGTCAGAGCCATGGATCCAAGGATGCGAGAGCGCTATAACGACTGGAAAGCGCTTGTGGATACCAACGGC
GATGGCCAACTCAGTGCTGCTGAGCTCAGCGATCGCGATGTGCAGACAATTCTCAACGAGGCGAAGATTCCTTGGATTGA
TGACACTGCCGATGGCTCCAAGGGCAGCATGCTCATGCACCACAAGTTTATTGTGATTGACAATCGCCAAGTGATTGCAA
CGACGGCAAACTTTACCCTCAGTGATGTCCACGGTGACTTGGGACGACCGGATACCCGTGGCAATGCCAACTCCCTTGTC
GTGATTGATAGCCCCGCCGTGGCACGCCTATTTACCGAGGAATTTAATATGATGTGGGGGGATGGTCCCGGTGGTCAGCC
CAACAGTCGCTTTGGGGTCAAAAAGCCAGTGCGTCCCCCCCAACGGGTGGCTGTGGGCGATGCCATGGTCACGGTGCGCT
TTTCGCCGACCCCGCGATCGCAACCCTGGGTGACCTCCACGAATGGGTTAATTGGTCAAATACTCGGCCAGGCTCGCCAA
AAAATTGATATGGCGCTCTTTGTCTTCTCGGATCAGGAACTGTCCAACGTTTTAGAGGAACGCCATAACCAAGGGGTGAA
AATTCGTGCCCTCATTGATCGGGGATTTATCTACCGTGACTTTAGCGAAGCCCTCGATATGATGGGAGTGGCGATGGCCA
ATACCACCCAAGCCCGTCAAGGTAACTGTTACTACGAAGCCGCTAACCGCCCGTGGCCAAACCCCTTGCAAACGGTGGGG
ACTCCCCTACTCCCAGAGGGGGATAAGCTGCACCATAAGTACGGCGTTGTTGACGATCGCACGGTGATTGTGGGTTCCCA
CAACTGGTCAGAGGCGGCCAATCGCGGTAACGATGAATTTTTGCTGGTGATTGAGCATCCCACGGTAGCAGCCCACTACG
AACGGGAGTTTGAGCGGCTCTATAGCAATAGTCGTTTAGGTCTGCCGCAATACGTTCGCGATCGCATCCAGCAACAGCTG
ACCACCTGTGGCGGTCCTATTGCCACCCGAGTTGCCCCCGCTTCCGCAAATCGTGCCCCCACGCCTACCTCACGGGTCAA
TTTGAACACAGCGACTGCTGCTGAACTGGAGACCCTACCGGGCGTCGGATCAAAACTAGCGGCTGAAATTATCCGTGCCC
GCGAGCACAAGCCCTTTCAATCCTTGGCAGATTTAGATGCTGTCCCTGGTGTTGGGCCGAAGCTCCTGGAACGCTTGCGC
GATCGCGTGACGTGGTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(81-259)

PLD-like domain (PLDc_2)

(313-460)

Helix-hairpin-helix motif (HHH_3)

(504-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

48.763

100

0.488

Multiple sequence alignment