Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SP_RS08260 Genome accession   NC_003028
Coordinates   1572389..1572985 (-) Length   198 a.a.
NCBI ID   WP_000966743.1    Uniprot ID   P0CB76
Organism   Streptococcus pneumoniae TIGR4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1567389..1577985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP_RS08240 (SP_1668) - 1568320..1569024 (-) 705 WP_001055246.1 TIGR02206 family membrane protein -
  SP_RS08245 (SP_1669) - 1569115..1569726 (-) 612 WP_000857988.1 NUDIX hydrolase N-terminal domain-containing protein -
  SP_RS08250 (SP_1670) - 1569713..1571086 (-) 1374 WP_000778692.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SP_RS08255 (SP_1671) - 1571170..1572213 (-) 1044 WP_000814631.1 D-alanine--D-alanine ligase -
  SP_RS08260 (SP_1672) recR 1572389..1572985 (-) 597 WP_000966743.1 recombination mediator RecR Machinery gene
  SP_RS08265 (SP_1673) pbp2b 1572996..1575053 (-) 2058 WP_001829432.1 penicillin-binding protein 2B -
  SP_RS08270 (SP_1674) - 1575253..1576104 (+) 852 WP_000360333.1 MurR/RpiR family transcriptional regulator -
  SP_RS08275 (SP_1675) - 1576120..1577004 (-) 885 WP_000222983.1 ROK family protein -
  SP_RS08280 (SP_1676) - 1577022..1577939 (-) 918 WP_001281507.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21688.86 Da        Isoelectric Point: 4.5622

>NTDB_id=22237 SP_RS08260 WP_000966743.1 1572389..1572985(-) (recR) [Streptococcus pneumoniae TIGR4]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=22237 SP_RS08260 WP_000966743.1 1572389..1572985(-) (recR) [Streptococcus pneumoniae TIGR4]
ATGCTTTATCCAACACCTATTGCCAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACTGATCCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAGCCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
TCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTCAAGAGCCTTATGACTCGTCTTATGGATA
GTGAGGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACTTCCATGTATCTTTCACGTTTGCTC
AAGCCGGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCCATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0CB76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

100

100

1
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485

Multiple sequence alignment