Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C2H96_RS11175 Genome accession   NZ_CP026035
Coordinates   2202540..2202830 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0ABU0VDB5
Organism   Bacillus subtilis strain PK5_68     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2197540..2207830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS11160 (C2H96_11095) yabE 2197735..2199048 (-) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -
  C2H96_RS11165 (C2H96_11100) dayD 2199204..2199971 (-) 768 WP_014475570.1 TatD family hydrolase -
  C2H96_RS11170 (C2H96_11105) metG 2200051..2202045 (-) 1995 WP_021479730.1 methionine--tRNA ligase -
  C2H96_RS11175 (C2H96_11110) abrB 2202540..2202830 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  C2H96_RS11180 (C2H96_11115) rsmI 2202879..2203757 (-) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  C2H96_RS11185 (C2H96_11120) yazA 2203732..2204031 (-) 300 WP_014475567.1 GIY-YIG nuclease family protein -
  C2H96_RS11190 (C2H96_11125) trmNF 2204018..2204761 (-) 744 WP_021479732.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  C2H96_RS11195 (C2H96_11130) yabA 2204820..2205179 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  C2H96_RS11200 (C2H96_11135) yaaT 2205194..2206021 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT Regulator
  C2H96_RS11205 (C2H96_11140) holB 2206024..2207013 (-) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  C2H96_RS11210 (C2H96_11145) yaaR 2207025..2207465 (-) 441 WP_009966249.1 YaaR family protein -
  C2H96_RS11215 (C2H96_11150) darA 2207478..2207807 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=222366 C2H96_RS11175 WP_003226760.1 2202540..2202830(+) (abrB) [Bacillus subtilis strain PK5_68]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=222366 C2H96_RS11175 WP_003226760.1 2202540..2202830(+) (abrB) [Bacillus subtilis strain PK5_68]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1