Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   C2H96_RS03055 Genome accession   NZ_CP026035
Coordinates   660126..661151 (-) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain PK5_68     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 655126..666151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS03020 (C2H96_02955) - 655612..656508 (-) 897 WP_249848242.1 2-dehydropantoate 2-reductase -
  C2H96_RS03025 (C2H96_02960) ylbP 656667..657149 (+) 483 WP_014476736.1 N-acetyltransferase -
  C2H96_RS03030 (C2H96_02965) gerR 657206..657787 (-) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  C2H96_RS03035 (C2H96_02970) rpmF 657933..658112 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  C2H96_RS03040 (C2H96_02975) ylbN 658134..658652 (-) 519 WP_014479718.1 DUF177 domain-containing protein -
  C2H96_RS03045 (C2H96_02980) - 658680..658865 (+) 186 WP_003232215.1 hypothetical protein -
  C2H96_RS03050 (C2H96_02985) ylbM 658862..660109 (+) 1248 WP_041850860.1 nucleotidyltransferase -
  C2H96_RS03055 (C2H96_02990) sepM 660126..661151 (-) 1026 WP_003245451.1 protease DdcP Regulator
  C2H96_RS03060 (C2H96_02995) ylbK 661153..661935 (-) 783 WP_003232221.1 patatin family protein -
  C2H96_RS03065 (C2H96_03000) spoVV 662116..663342 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  C2H96_RS03070 (C2H96_03005) coaD 663353..663838 (-) 486 WP_120028062.1 pantetheine-phosphate adenylyltransferase -
  C2H96_RS03075 (C2H96_03010) rsmD 663843..664397 (-) 555 WP_120028061.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C2H96_RS03080 (C2H96_03015) ylbG 664720..664992 (-) 273 WP_009967171.1 YlbG family protein -
  C2H96_RS03085 (C2H96_03020) ylbF 665047..665496 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C2H96_RS03090 (C2H96_03025) ylbE 665612..665851 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=222305 C2H96_RS03055 WP_003245451.1 660126..661151(-) (sepM) [Bacillus subtilis strain PK5_68]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=222305 C2H96_RS03055 WP_003245451.1 660126..661151(-) (sepM) [Bacillus subtilis strain PK5_68]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGGGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCGAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402