Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   C2H96_RS03085 Genome accession   NZ_CP026035
Coordinates   665047..665496 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain PK5_68     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 660047..670496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS03055 (C2H96_02990) sepM 660126..661151 (-) 1026 WP_003245451.1 protease DdcP Regulator
  C2H96_RS03060 (C2H96_02995) ylbK 661153..661935 (-) 783 WP_003232221.1 patatin family protein -
  C2H96_RS03065 (C2H96_03000) spoVV 662116..663342 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  C2H96_RS03070 (C2H96_03005) coaD 663353..663838 (-) 486 WP_120028062.1 pantetheine-phosphate adenylyltransferase -
  C2H96_RS03075 (C2H96_03010) rsmD 663843..664397 (-) 555 WP_120028061.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C2H96_RS03080 (C2H96_03015) ylbG 664720..664992 (-) 273 WP_009967171.1 YlbG family protein -
  C2H96_RS03085 (C2H96_03020) ylbF 665047..665496 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C2H96_RS03090 (C2H96_03025) ylbE 665612..665851 (-) 240 WP_003232231.1 YlbE-like family protein -
  C2H96_RS03095 (C2H96_03030) ylbD 665867..666265 (-) 399 WP_120028060.1 YlbD family protein -
  C2H96_RS03100 (C2H96_03035) ylbC 666496..667536 (-) 1041 WP_120028059.1 CAP domain-containing protein -
  C2H96_RS03105 (C2H96_03040) ylbB 667620..668066 (-) 447 WP_003221362.1 CBS domain-containing protein -
  C2H96_RS03110 (C2H96_03045) ylbA 668206..668568 (+) 363 WP_003232238.1 YugN family protein -
  C2H96_RS03115 (C2H96_03050) ctaG 668600..669493 (-) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  C2H96_RS03120 (C2H96_03055) ctaF 669521..669853 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  C2H96_RS03125 (C2H96_03060) ctaE 669856..670479 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=222306 C2H96_RS03085 WP_003221370.1 665047..665496(-) (ylbF) [Bacillus subtilis strain PK5_68]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=222306 C2H96_RS03085 WP_003221370.1 665047..665496(-) (ylbF) [Bacillus subtilis strain PK5_68]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAATGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment