Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   TLL_RS00600 Genome accession   NC_004113
Coordinates   98868..100892 (-) Length   674 a.a.
NCBI ID   WP_011055977.1    Uniprot ID   -
Organism   Thermosynechococcus vestitus BP-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 93868..105892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TLL_RS00570 (tlr0115) - 93876..95027 (+) 1152 WP_172598138.1 cysteine desulfurase family protein -
  TLL_RS00575 (tlr0116) - 95342..95677 (+) 336 WP_011055971.1 hypothetical protein -
  TLL_RS00580 (tsl0117) - 95698..95970 (-) 273 WP_011055972.1 DUF3143 domain-containing protein -
  TLL_RS00585 (tll0118) - 95967..96440 (-) 474 WP_011055973.1 J domain-containing protein -
  TLL_RS13410 - 96449..97670 (-) 1222 Protein_117 type II secretion system F family protein -
  TLL_RS00595 (tll0121) pilT 97701..98798 (-) 1098 WP_011055976.1 type IV pilus twitching motility protein PilT Machinery gene
  TLL_RS00600 (tll0122) pilB/pilB1 98868..100892 (-) 2025 WP_011055977.1 GspE/PulE family protein Machinery gene
  TLL_RS00605 (tsr0123) - 101154..101378 (+) 225 WP_164920641.1 hypothetical protein -
  TLL_RS00610 (tsr0124) - 101379..101576 (+) 198 WP_011055979.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  TLL_RS00615 (tlr0125) - 101540..103114 (+) 1575 WP_164920642.1 right-handed parallel beta-helix repeat-containing protein -
  TLL_RS00620 (tll0126) - 103111..104085 (-) 975 WP_011055981.1 hypothetical protein -
  TLL_RS00625 (tlr0127) - 104141..105136 (+) 996 WP_011055982.1 glycosyltransferase family 2 protein -
  TLL_RS12610 - 105314..105451 (+) 138 WP_165442170.1 hypothetical protein -

Sequence

Protein


Download         Length: 674 a.a.        Molecular weight: 74296.66 Da        Isoelectric Point: 5.4278

>NTDB_id=22229 TLL_RS00600 WP_011055977.1 98868..100892(-) (pilB/pilB1) [Thermosynechococcus vestitus BP-1]
MVNTSPSSSRKALTVRGRAASPTERAIVASGYASIDQVREAMNTARKTGKSLVAVLQEITGTTMPPDVLRQYHKQQLFEL
KVIYGVDCLDPELNRFPTEQIEELIATIVPIDTCRTYQVIPIAKHLDADPPYLLVAMVDPDNLQAIDNLTRLLRSHNLTL
KRMVITLEDYQRLIDPILNKQVAETAASKNAPAEIGDLNIEEDIEAIGGLEEVAGEQEVDLAEALRGAEDAPIIALVNKI
LAKALTEGVSDIHVEPQEEYLRIRFRKDGVLHQAFDPLPKKIVPAVVSRFKILADLDIAERRAPQDGRIRKMFQGRRVDF
RVNTLPSRWGEKVCLRILDNSATQLGLDKLITDPESLAIVREMTKRPFGLILVTGPTGSGKTTTLYSALAECNSPGVNIS
TAEDPIEYTLPGLTQVQVIREKGMDFASILRAFLRQDPDVILVGETRDKETAKTAIEAALTGHLVLTTLHTNDAPSAIAR
LSEMGIEPFMVSASLIGVVAQRLMRRVCSECRIPYTPTPEELARFGLSASKDVNLTLYKANKLTPEQIQAAKASGQPICS
KCGGVGYKGRVGVYEIMRVTERLQRLITEAAPTEQIKEAAVEEGMKTLLAYSLELVKQGLTTFEEVERVTFTDTGLEAEL
KAKRKSSLTCRGCGAELAPEWLDCPYCMTPRFLD

Nucleotide


Download         Length: 2025 bp        

>NTDB_id=22229 TLL_RS00600 WP_011055977.1 98868..100892(-) (pilB/pilB1) [Thermosynechococcus vestitus BP-1]
ATGGTCAACACATCCCCATCTTCCTCTCGCAAAGCACTTACCGTACGGGGTAGAGCCGCTAGCCCCACAGAACGGGCCAT
TGTTGCTTCCGGTTACGCCAGTATCGATCAAGTGCGGGAAGCTATGAACACCGCCCGCAAAACTGGCAAGTCCCTAGTAG
CCGTGTTGCAGGAGATTACGGGCACCACGATGCCCCCCGATGTGTTACGCCAGTACCACAAACAACAGCTTTTTGAACTC
AAAGTCATCTATGGGGTTGATTGCCTCGATCCCGAACTCAATCGTTTCCCCACTGAGCAAATCGAGGAACTGATTGCCAC
AATTGTACCCATTGACACCTGCCGCACCTACCAAGTCATTCCCATTGCCAAGCACCTGGATGCCGACCCCCCCTATCTGT
TGGTGGCGATGGTCGATCCCGACAACCTCCAAGCCATTGACAACCTTACCCGTCTGCTGCGCAGTCATAACCTCACCCTC
AAGCGGATGGTAATTACCCTAGAGGACTACCAACGCCTCATTGATCCGATTCTCAATAAGCAGGTGGCAGAAACCGCCGC
CAGCAAAAATGCCCCTGCCGAGATCGGTGACCTCAACATTGAAGAAGACATCGAAGCCATAGGCGGCCTCGAAGAGGTGG
CAGGGGAACAGGAAGTTGACCTCGCTGAAGCCTTAAGGGGGGCAGAGGATGCGCCCATTATTGCCCTGGTGAACAAAATC
CTAGCCAAGGCGCTCACCGAAGGGGTCTCTGACATCCACGTCGAACCCCAGGAGGAATACCTGCGGATTCGTTTCCGCAA
AGATGGGGTGCTCCACCAAGCCTTTGATCCACTGCCAAAGAAAATCGTGCCAGCGGTAGTTTCTCGCTTCAAGATCTTGG
CTGACCTCGATATTGCGGAGCGGCGTGCCCCCCAAGATGGTCGTATCCGCAAAATGTTCCAAGGGCGACGGGTGGACTTC
CGCGTGAATACCCTCCCCAGCCGCTGGGGTGAGAAAGTGTGTTTGCGGATTCTCGATAACTCCGCCACTCAATTGGGTCT
CGACAAACTGATTACCGACCCTGAGAGTCTTGCCATCGTGCGGGAAATGACCAAGCGCCCCTTTGGTCTCATCCTCGTTA
CAGGTCCGACGGGTTCAGGGAAAACCACCACCCTGTACTCAGCACTCGCCGAATGTAATAGCCCCGGTGTCAACATCAGT
ACAGCAGAAGACCCGATTGAATACACCCTGCCGGGCCTGACGCAGGTGCAGGTCATTCGGGAAAAGGGCATGGACTTTGC
CTCAATTCTACGGGCCTTTCTCCGCCAAGACCCCGATGTCATTCTGGTGGGGGAAACCCGCGACAAGGAAACAGCAAAAA
CCGCTATTGAAGCTGCCCTGACGGGTCACTTGGTGTTAACCACCCTGCACACCAACGATGCGCCGAGCGCGATCGCCCGC
CTTTCGGAAATGGGAATTGAGCCTTTCATGGTTTCCGCTTCCCTGATTGGTGTCGTGGCACAGCGCCTCATGCGGCGGGT
ATGCAGTGAGTGTCGCATTCCCTACACCCCTACCCCTGAAGAACTAGCCCGTTTTGGACTATCAGCCTCTAAGGACGTTA
ACCTCACCCTCTACAAAGCCAATAAACTCACACCCGAGCAGATTCAAGCGGCCAAAGCCAGTGGCCAACCCATCTGTAGT
AAATGTGGTGGCGTAGGCTACAAAGGACGGGTTGGTGTTTATGAAATCATGCGGGTGACCGAACGGCTACAACGCCTGAT
TACAGAAGCTGCCCCCACCGAGCAAATTAAAGAAGCCGCCGTCGAAGAGGGGATGAAAACCCTGTTGGCCTACAGCTTGG
AGCTTGTTAAACAGGGACTGACAACCTTTGAGGAGGTGGAGCGGGTGACCTTTACAGACACTGGGCTAGAGGCAGAGCTG
AAAGCCAAGCGGAAGAGCTCGCTGACCTGTCGCGGTTGTGGTGCTGAACTGGCGCCTGAGTGGTTGGATTGTCCCTATTG
CATGACTCCCCGCTTTCTAGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(239-506)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(74-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

65.244

97.329

0.635
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.608

93.769

0.362

Multiple sequence alignment