Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   A6J57_RS06470 Genome accession   NZ_CP020405
Coordinates   1343504..1344049 (+) Length   181 a.a.
NCBI ID   WP_005758192.1    Uniprot ID   -
Organism   Pasteurella multocida strain FDAARGOS_218     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338504..1349049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J57_RS06445 (A6J57_06430) - 1338932..1339861 (+) 930 WP_005725108.1 phosphatidate cytidylyltransferase -
  A6J57_RS06450 (A6J57_06435) mog 1339887..1340465 (+) 579 WP_005725110.1 molybdopterin adenylyltransferase -
  A6J57_RS06455 (A6J57_06440) glnB 1340510..1340848 (+) 339 WP_005725112.1 nitrogen regulatory protein P-II -
  A6J57_RS06460 (A6J57_06445) - 1340849..1342102 (+) 1254 WP_005755688.1 AI-2E family transporter -
  A6J57_RS06465 (A6J57_06450) - 1342281..1343465 (+) 1185 WP_005752447.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  A6J57_RS06470 (A6J57_06455) pilF/pilF2 1343504..1344049 (+) 546 WP_005758192.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  A6J57_RS06475 (A6J57_06460) - 1344172..1345128 (+) 957 WP_005725132.1 RodZ family helix-turn-helix domain-containing protein -
  A6J57_RS06480 (A6J57_06465) ispG 1345155..1346258 (+) 1104 WP_005719572.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  A6J57_RS06485 (A6J57_06470) hisS 1346288..1347559 (+) 1272 WP_005758195.1 histidine--tRNA ligase -
  A6J57_RS06490 (A6J57_06475) - 1347578..1348189 (+) 612 WP_005758197.1 YfgM family protein -
  A6J57_RS06495 (A6J57_06480) - 1348401..1348838 (+) 438 WP_005758199.1 isoprenylcysteine carboxylmethyltransferase family protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20858.43 Da        Isoelectric Point: 8.1524

>NTDB_id=222277 A6J57_RS06470 WP_005758192.1 1343504..1344049(+) (pilF/pilF2) [Pasteurella multocida strain FDAARGOS_218]
MNRTFRFGIASIFSLLLCACVSQESNKTFDSHEAAKARIELGLGYLSQHDFARAKQNFDKALSHAPNYYLSHAVLAYLYQ
KQGHLDLARHAYEKAIKLDKNQGDVLNNYGTFLCQQGEFEQAYKQFSQALNAPHYYQHADTYENLVWCASFAKDAVRYQQ
NLQHLTQFDPSRAKKFPPHIE

Nucleotide


Download         Length: 546 bp        

>NTDB_id=222277 A6J57_RS06470 WP_005758192.1 1343504..1344049(+) (pilF/pilF2) [Pasteurella multocida strain FDAARGOS_218]
ATGAACCGTACTTTTCGATTTGGGATCGCGAGCATTTTTTCTCTTTTGCTTTGTGCTTGTGTGAGTCAAGAAAGTAACAA
AACGTTTGATTCACATGAGGCGGCAAAAGCCAGAATTGAATTAGGTTTAGGCTATTTATCTCAGCATGATTTTGCGCGAG
CAAAGCAAAATTTTGATAAAGCTTTATCCCATGCCCCAAATTACTATTTATCTCATGCTGTCTTAGCGTATCTCTACCAA
AAACAAGGTCATCTTGATTTAGCCCGTCACGCTTATGAAAAGGCGATAAAATTAGATAAAAATCAAGGCGATGTATTAAA
TAATTATGGTACCTTTTTATGCCAACAAGGTGAGTTTGAACAAGCTTACAAACAATTTTCTCAAGCATTAAATGCCCCAC
ATTATTATCAACACGCCGATACTTATGAAAATTTGGTTTGGTGTGCGTCTTTTGCCAAAGACGCTGTCCGTTATCAACAA
AATTTGCAACATTTAACGCAGTTTGATCCCAGTAGAGCAAAAAAATTTCCGCCACATATTGAGTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_17)

(91-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

52.695

92.265

0.486
  pilF Glaesserella parasuis strain SC1401

45.946

100

0.47

Multiple sequence alignment